View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16284_low_16 (Length: 258)

Name: NF16284_low_16
Description: NF16284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16284_low_16
NF16284_low_16
[»] chr4 (2 HSPs)
chr4 (84-249)||(39483807-39483972)
chr4 (18-64)||(40487888-40487934)
[»] chr8 (6 HSPs)
chr8 (17-67)||(45215953-45216003)
chr8 (18-65)||(42667938-42667985)
chr8 (18-64)||(20056551-20056597)
chr8 (18-66)||(45215443-45215491)
chr8 (18-68)||(20057062-20057112)
chr8 (18-67)||(42667424-42667473)
[»] chr3 (4 HSPs)
chr3 (18-65)||(52288429-52288476)
chr3 (23-66)||(53583824-53583867)
chr3 (18-64)||(3377009-3377055)
chr3 (18-66)||(3382511-3382559)
[»] scaffold0246 (1 HSPs)
scaffold0246 (18-64)||(25827-25873)
[»] chr2 (3 HSPs)
chr2 (18-63)||(42847843-42847888)
chr2 (18-66)||(39641222-39641270)
chr2 (18-71)||(42847345-42847398)
[»] chr5 (5 HSPs)
chr5 (18-65)||(6013547-6013594)
chr5 (18-68)||(7932742-7932792)
chr5 (18-69)||(7933257-7933308)
chr5 (18-63)||(42991640-42991685)
chr5 (21-64)||(35461417-35461460)
[»] chr6 (5 HSPs)
chr6 (18-76)||(12340761-12340819)
chr6 (18-64)||(22972859-22972905)
chr6 (18-64)||(23815494-23815540)
chr6 (18-65)||(5195638-5195685)
chr6 (18-64)||(5238968-5239014)


Alignment Details
Target: chr4 (Bit Score: 158; Significance: 4e-84; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 84 - 249
Target Start/End: Complemental strand, 39483972 - 39483807
Alignment:
Q  84 atttggacattaccagatggtcttggtcttcaacttagaggcagctgagatcatcatacaaacttttcatcgttctttccgtgaccgtaggcaatgagaa 183  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39483972 atttggacaataccagatggtcttggtcttcaacttagaggcagctgagatcatcatacaaacttttcatcgttctttccgtgaccgtaggcaatgagaa 39483873  T
Q  184 ctaagacttatttcccaaattgcataagtgtcaagttggacccgtaattcttcaattttcctatgt 249  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  39483872 ctaagacttatttcccaaattgcataagtgtcaagttggacccgtaattcttcaattttccaatgt 39483807  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 40487934 - 40487888
Alignment:
Q  18 atctattacaaacgtcaaacataaaggacccgtggtgtaattaagcc 64  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||    
T  40487934 atctgttacaaacgtcaaacataaaggacccgtggtgtaattaagcc 40487888  T

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Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 45215953 - 45216003
Alignment:
Q  17 catctattacaaacgtcaaacataaaggacccgtggtgtaattaagcctaa 67  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  45215953 catctgttacaaacgtcaaacataaaggacccgtggtgtaattaagcctaa 45216003  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 42667938 - 42667985
Alignment:
Q  18 atctattacaaacgtcaaacataaaggacccgtggtgtaattaagcct 65  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||    
T  42667938 atctgttacaaacgtcaaacataaaggacccgtggtgtaattaagcct 42667985  T

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Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 20056597 - 20056551
Alignment:
Q  18 atctattacaaacgtcaaacataaaggacccgtggtgtaattaagcc 64  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||    
T  20056597 atctgttacaaacgtcaaacataaaggacccgtggtgtaattaagcc 20056551  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 45215491 - 45215443
Alignment:
Q  18 atctattacaaacgtcaaacataaaggacccgtggtgtaattaagccta 66  Q
    |||||||||||||||||||| ||||||||  ||||||||||||||||||    
T  45215491 atctattacaaacgtcaaacttaaaggacatgtggtgtaattaagccta 45215443  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 20057062 - 20057112
Alignment:
Q  18 atctattacaaacgtcaaacataaaggacccgtggtgtaattaagcctaaa 68  Q
    |||| ||||||||||||||| ||||||||  ||||||||||||||||||||    
T  20057062 atctgttacaaacgtcaaacttaaaggacatgtggtgtaattaagcctaaa 20057112  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 42667473 - 42667424
Alignment:
Q  18 atctattacaaacgtcaaacataaaggacccgtggtgtaattaagcctaa 67  Q
    |||| ||||||||||||||| ||||||||  ||| |||||||||||||||    
T  42667473 atctgttacaaacgtcaaacttaaaggacatgtgatgtaattaagcctaa 42667424  T

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Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 52288429 - 52288476
Alignment:
Q  18 atctattacaaacgtcaaacataaaggacccgtggtgtaattaagcct 65  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||    
T  52288429 atctgttacaaacgtcaaacataaaggacccgtggtgtaattaagcct 52288476  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 23 - 66
Target Start/End: Complemental strand, 53583867 - 53583824
Alignment:
Q  23 ttacaaacgtcaaacataaaggacccgtggtgtaattaagccta 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  53583867 ttacaaacgtcaaacataaaggacccgtggtgtaattaagccta 53583824  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 3377055 - 3377009
Alignment:
Q  18 atctattacaaacgtcaaacataaaggacccgtggtgtaattaagcc 64  Q
    |||| ||||||||||||||| ||||||||| ||||||||||||||||    
T  3377055 atctgttacaaacgtcaaacttaaaggacctgtggtgtaattaagcc 3377009  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 3382511 - 3382559
Alignment:
Q  18 atctattacaaacgtcaaacataaaggacccgtggtgtaattaagccta 66  Q
    |||| ||||||||||||||| ||||| ||| ||| ||||||||||||||    
T  3382511 atctgttacaaacgtcaaacttaaagaacctgtgatgtaattaagccta 3382559  T

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Target: scaffold0246 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 25873 - 25827
Alignment:
Q  18 atctattacaaacgtcaaacataaaggacccgtggtgtaattaagcc 64  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||    
T  25873 atctgttacaaacgtcaaacataaaggacccgtggtgtaattaagcc 25827  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 42847843 - 42847888
Alignment:
Q  18 atctattacaaacgtcaaacataaaggacccgtggtgtaattaagc 63  Q
    |||| |||||||||||||||||||||||||||||||||||||||||    
T  42847843 atctgttacaaacgtcaaacataaaggacccgtggtgtaattaagc 42847888  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 39641270 - 39641222
Alignment:
Q  18 atctattacaaacgtcaaacataaaggacccgtggtgtaattaagccta 66  Q
    |||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  39641270 atctgttacaaatgtcaaacataaaggacccgtggtgtaattaagccta 39641222  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 42847398 - 42847345
Alignment:
Q  18 atctattacaaacgtcaaacataaaggacccgtggtgtaattaagcctaaatat 71  Q
    |||| ||||||||||||||| ||||||||  |||||||||||||||||| ||||    
T  42847398 atctgttacaaacgtcaaacttaaaggacatgtggtgtaattaagcctatatat 42847345  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 6013594 - 6013547
Alignment:
Q  18 atctattacaaacgtcaaacataaaggacccgtggtgtaattaagcct 65  Q
    |||| |||||||||||||||||||||||| ||||||||||||||||||    
T  6013594 atctgttacaaacgtcaaacataaaggactcgtggtgtaattaagcct 6013547  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 7932792 - 7932742
Alignment:
Q  18 atctattacaaacgtcaaacataaaggacccgtggtgtaattaagcctaaa 68  Q
    |||| |||||||||||||||||||||||||| |||||||||||| ||||||    
T  7932792 atctgttacaaacgtcaaacataaaggacccatggtgtaattaaacctaaa 7932742  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 7933257 - 7933308
Alignment:
Q  18 atctattacaaacgtcaaacataaaggacccgtggtgtaattaagcctaaat 69  Q
    |||| ||||||||||||||| ||||||||  |||||||||||||||||||||    
T  7933257 atctgttacaaacgtcaaacttaaaggacatgtggtgtaattaagcctaaat 7933308  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 42991685 - 42991640
Alignment:
Q  18 atctattacaaacgtcaaacataaaggacccgtggtgtaattaagc 63  Q
    |||| ||||||||||||||| ||||||||| |||||||||||||||    
T  42991685 atctgttacaaacgtcaaacttaaaggacctgtggtgtaattaagc 42991640  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 64
Target Start/End: Complemental strand, 35461460 - 35461417
Alignment:
Q  21 tattacaaacgtcaaacataaaggacccgtggtgtaattaagcc 64  Q
    |||||||||| |||||| ||||||||||||||||||||| ||||    
T  35461460 tattacaaacctcaaacttaaaggacccgtggtgtaatttagcc 35461417  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 12340819 - 12340761
Alignment:
Q  18 atctattacaaacgtcaaacataaaggacccgtggtgtaattaagcctaaatattacat 76  Q
    |||| |||||||||||||||||||||||||| ||||||||||||| | |||||| ||||    
T  12340819 atctgttacaaacgtcaaacataaaggacccatggtgtaattaagtcaaaatatgacat 12340761  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 22972905 - 22972859
Alignment:
Q  18 atctattacaaacgtcaaacataaaggacccgtggtgtaattaagcc 64  Q
    |||| |||||||||||||||||||||||| |||||||||||||||||    
T  22972905 atctgttacaaacgtcaaacataaaggactcgtggtgtaattaagcc 22972859  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 23815494 - 23815540
Alignment:
Q  18 atctattacaaacgtcaaacataaaggacccgtggtgtaattaagcc 64  Q
    |||| |||||||||||||||||||||||| |||||||||||||||||    
T  23815494 atctgttacaaacgtcaaacataaaggactcgtggtgtaattaagcc 23815540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 5195685 - 5195638
Alignment:
Q  18 atctattacaaacgtcaaacataaaggacccgtggtgtaattaagcct 65  Q
    |||| ||||||||||||||| ||||||||| |||||||||||||||||    
T  5195685 atctgttacaaacgtcaaacttaaaggacctgtggtgtaattaagcct 5195638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 5238968 - 5239014
Alignment:
Q  18 atctattacaaacgtcaaacataaaggacccgtggtgtaattaagcc 64  Q
    |||| ||||||||||||||  ||||||||||||||||||||||||||    
T  5238968 atctgttacaaacgtcaaatttaaaggacccgtggtgtaattaagcc 5239014  T

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