View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16284_low_2 (Length: 485)
Name: NF16284_low_2
Description: NF16284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16284_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 16 - 471
Target Start/End: Complemental strand, 33856496 - 33856028
Alignment:
| Q |
16 |
aaaacaacgaaatcatctaactctaactcttccggtgatggtcctagtgtctccgctgattcaacatccggtaaagcccagaagaagtctgggaagaaga |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
33856496 |
aaaacaacgaaatcatctaactctaactcttccggtgatggtactagtgtctccgctgatttaacatccggtaaagcccagaagaagtctgggaagaaga |
33856397 |
T |
|
| Q |
116 |
cagatctggataagggtaaatctgttgtagcttcttctggtgttaagaaggagccaaagactgaatctgatccgatgaatgttgacggtggtgataatga |
215 |
Q |
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| T |
33856396 |
cagatctggataagggtaaatctgttgtagcttcttctggtgttaagaaggagccaaagactgaatccgatccgatgaatgttgacggtggtgataatga |
33856297 |
T |
|
| Q |
216 |
agtttccaactccaaatttataggggatccaattccaatagaggtggctaaactgcgctggccgaagcggtatcaggagaaggtataattctctttcttt |
315 |
Q |
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| T |
33856296 |
agtttccagctccaaatttctaggggatccaattccaatagaggcagctaaactgcgctggccgaagcggtatcaggagaaggtatacttctctttcttt |
33856197 |
T |
|
| Q |
316 |
cgttttcttgtttacaaagaattgctgaatgattgaaatttggacatgatgtg-------------ctatttgtattttgtaaatgttgtagaatacgat |
402 |
Q |
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| T |
33856196 |
cgttttcttgtttacaaagaactgctgaatgattgaaatttggacatgatgtgtgaaaatggtatcctatttgtattttgtaaatgttgtagaatacgat |
33856097 |
T |
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| Q |
403 |
gaattgaataagtgtcaatgtatatgtttatgttgaaattgaatctatcttagagatataataaaaata |
471 |
Q |
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| T |
33856096 |
gaattgaataagtgtcgatgtatatgtttatgttggaattgaatctatcttagagatataataaaaata |
33856028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 91; Significance: 7e-44; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 16 - 298
Target Start/End: Original strand, 28213899 - 28214181
Alignment:
| Q |
16 |
aaaacaacgaaatcatctaactctaactcttccggtgatggtcctagtgtctccgctgattcaacatccggtaaagcccagaagaagtctgggaagaaga |
115 |
Q |
| |
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||||| |||||||||||| ||||| |||| |||||||| || || |||||| | ||| |||||||| ||||| | |||||||||| |||||||| |
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| T |
28213899 |
aaaactacgaaatcatcttcctctatctctcccggtgattgtgttaatgtctctgatgactcaacatctggtaagaatcggaagaagtctaagaagaaga |
28213998 |
T |
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| Q |
116 |
cagatctggataagggtaaatctgttgtagcttcttctggtgttaagaaggagccaaagactgaatctgatccgatgaatgttgacggtggtgataatga |
215 |
Q |
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| | ||||||| | |||||||||||||||||||||| || | ||||| ||||||||| |||| ||| |||||||||||||||||| |||||| |||| |
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| T |
28213999 |
cgcgtatggataatgataaatctgttgtagcttcttctattggtgagaagaagccaaagagtgaaactgttccgatgaatgttgacgggggtgatgatga |
28214098 |
T |
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| Q |
216 |
agtttccaactccaaatttataggggatccaattccaatagaggtggctaaactgcgctggccgaagcggtatcaggagaagg |
298 |
Q |
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| T |
28214099 |
agtttccaactccaaatttctcagagatccgattctgttaaaggaggctaaactgcgctggccgaaacggtatctggagaagg |
28214181 |
T |
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