View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16284_low_21 (Length: 226)
Name: NF16284_low_21
Description: NF16284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16284_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 144; Significance: 7e-76; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 54 - 213
Target Start/End: Original strand, 27513624 - 27513783
Alignment:
| Q |
54 |
aatatatattctacactcacaacattggaatctaatctattcatattcaaattagttcaaaacaatcaaaattcaaaaaactcaacctcttcatcatcag |
153 |
Q |
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||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
27513624 |
aatatatattctacactcacatcattgaaatctaatctattcatattcaaattagttcaaaacactcaaaattcaaaaaactcaacctcttcatcatcag |
27513723 |
T |
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| Q |
154 |
gcttgcagatagtttcatcaacttcccttgtattttcaaggtcttcggcaccttcttctc |
213 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27513724 |
gcttgcaggtagtttcatcaacttcccttgtattttcaaggtcttcggcaccttcttctc |
27513783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 95 - 213
Target Start/End: Complemental strand, 8675245 - 8675126
Alignment:
| Q |
95 |
catattcaaattagttcaaaacaatcaaaattcaaaaaactcaacctcttcatcatcaggcttgcagatagtttcatcaacttcccttgtattttcaa-g |
193 |
Q |
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|||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||| |||| |
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| T |
8675245 |
catattgaaattaggtcaaaacaatcaaaatttaaaaaactcaacctcttcatcatcaggcttgcaaacagtctcatcaacttcccttgtattctcaatc |
8675146 |
T |
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| Q |
194 |
gtcttcggcaccttcttctc |
213 |
Q |
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|||||||||||||||||||| |
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| T |
8675145 |
gtcttcggcaccttcttctc |
8675126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 20 - 195
Target Start/End: Complemental strand, 39210199 - 39210040
Alignment:
| Q |
20 |
cattcttgtatacatcaaatggagcatccattataatatatattctacactcacaacattggaatctaatctattcatattcaaattagttcaaaacaat |
119 |
Q |
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| T |
39210199 |
cattcttgtatacatcaaatggaacctccattataatatatattctacactcacaacattggaatctaatctattcatattcaaattagttc-------- |
39210108 |
T |
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| Q |
120 |
caaaattcaaaaaactcaacctcttcatcatcaggcttgcagatagtttcatcaacttcccttgtattttcaaggt |
195 |
Q |
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| T |
39210107 |
--------aaaaaaatcaacctcttcatcatcaggcttgcagatagtttcatcaacttcccttgtattttcaaggt |
39210040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 54 - 186
Target Start/End: Original strand, 24036791 - 24036927
Alignment:
| Q |
54 |
aatatatattctacactcacaacattggaatctaatctattcatattcaaa-ttagttcaaaacaatcaaaattcaaaaaactcaacctcttcatcatca |
152 |
Q |
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||||||||||||||||||| ||||||| ||||| || |||| |||| |||| |||| ||||||||||||||| | ||||||||||||||||||||||||| |
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| T |
24036791 |
aatatatattctacactcaaaacattgaaatctgatttatttatatacaaatttagatcaaaacaatcaaaact-aaaaaactcaacctcttcatcatca |
24036889 |
T |
|
| Q |
153 |
----ggcttgcagatagtttcatcaacttcccttgtat |
186 |
Q |
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| T |
24036890 |
ggatggcttgcagatagtttcatcaacttagcttgtat |
24036927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 83 - 192
Target Start/End: Complemental strand, 9461298 - 9461180
Alignment:
| Q |
83 |
atctaatctattcatattcaaattagttcaaaacaatcaaaattca---------aaaaactcaacctcttcatcatcaggcttgcagatagtttcatca |
173 |
Q |
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|||||||||| ||||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9461298 |
atctaatctaatcatattcaaattaggtcaaaacaatcaaaattaacaaaaaaaaaaaaactcaacctcttcatcatcaggcttgcagatagtttcatca |
9461199 |
T |
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| Q |
174 |
acttcccttgtattttcaa |
192 |
Q |
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|||||| | ||||||||| |
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| T |
9461198 |
acttccttcttattttcaa |
9461180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 64 - 176
Target Start/End: Original strand, 38950770 - 38950885
Alignment:
| Q |
64 |
ctacactcacaacattggaatctaatctattcatattcaaattagttcaaaacaatcaaaatt------caaaaaactcaacctcttcatcatcaggctt |
157 |
Q |
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||||||||||||| ||| ||||||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||| |
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| T |
38950770 |
ctacactcacaactttgaaatctaatctaatcatattcaaattaggtcaaaacaatcaaaattaaaaaaaaaaaaactcaacctct---tcatcaggctt |
38950866 |
T |
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| Q |
158 |
gcagatagtttcatcaact |
176 |
Q |
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||||||||||||||||||| |
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| T |
38950867 |
gcagatagtttcatcaact |
38950885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 3e-19; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 128 - 180
Target Start/End: Original strand, 18331979 - 18332031
Alignment:
| Q |
128 |
aaaaaactcaacctcttcatcatcaggcttgcagatagtttcatcaacttccc |
180 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
18331979 |
aaaaaactcaacctcttcatcatcaggcttgtagatagtttcatcaacttccc |
18332031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 59 - 126
Target Start/End: Original strand, 18331878 - 18331945
Alignment:
| Q |
59 |
atattctacactcacaacattggaatctaatctattcatattcaaattagttcaaaacaatcaaaatt |
126 |
Q |
| |
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||||||||||||||||| |||| ||||||||||| |||||||||||||| ||||||||||||||||| |
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| T |
18331878 |
atattctacactcacaatattgaaatctaatctaatcatattcaaattatgtcaaaacaatcaaaatt |
18331945 |
T |
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