View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16284_low_4 (Length: 442)
Name: NF16284_low_4
Description: NF16284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16284_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 396; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 5 - 423
Target Start/End: Complemental strand, 5391382 - 5390961
Alignment:
| Q |
5 |
ggtagattatactaaacaaacaaattattgtcaataaaatacgtcacaacatacacta---ttatataattagatgaactatatttttattcaggtgggt |
101 |
Q |
| |
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|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
5391382 |
ggtaaattaaactaaacaaacaaattattgtcaataaaatacgtcacaacatacactactattatataattagatgaactatatttttattcaggtgggt |
5391283 |
T |
|
| Q |
102 |
aagaaaaaaggaatgacatggttcattaatcgaccacaagttatctttggattttcaccttacagcatgatgaacctcattggcacgctttgtgtttacg |
201 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5391282 |
aagaaaaaaggaatgacatggttcattaatcgaccacaagttatctttggattttcaccttacagcatgatgaacctcattggcacgctttgtgtttacg |
5391183 |
T |
|
| Q |
202 |
ctgcaatttgcaagcatgagggtcttccattaaggtttcctggctcaaaagctgcatgggaatgttattcaacagcttcagatgctaatttaatatccga |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5391182 |
ctgcaatttgcaagcatgagggtcttccattaaggtttcctggctcaaaaggtgcatgggaatgttattcaacagcttcagatgctaatttaatatccga |
5391083 |
T |
|
| Q |
302 |
acaacatatttggggtgcagtggatcctaatgcaaagaatgaagcattcaactgcagcaatggcgatgttttcaggtggaaacatttgtggaaggtgtta |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5391082 |
acaacatatttggggtgcagtggatcctaatgcaaagaatgaagcattcaactgcagcaatggcgatgttttcaggtggaaacatttgtggaaggtgtta |
5390983 |
T |
|
| Q |
402 |
gcagaacggtttgagatcgatg |
423 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
5390982 |
gcagaacggtttgagatcgatg |
5390961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 86 - 423
Target Start/End: Complemental strand, 5400017 - 5399680
Alignment:
| Q |
86 |
ttttattcaggtgggtaagaaaaaaggaatgacatggttcattaatcgaccacaagttatctttggattttcaccttacagcatgatgaacctcattggc |
185 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5400017 |
ttttattcaggtgggtaagaaaaaaggaacgacatggttcattaatcgaccacaagttatctttggattttcaccttacagcatgatgaacctcattggc |
5399918 |
T |
|
| Q |
186 |
acgctttgtgtttacgctgcaatttgcaagcatgagggtcttccattaaggtttcctggctcaaaagctgcatgggaatgttattcaacagcttcagatg |
285 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
5399917 |
acgctttgtgtttacgctgcaatttgcaagcatgagggtcttccattaaggtttcctggctcaaaaggtgcatgggaatgttattcaacagcttcagatg |
5399818 |
T |
|
| Q |
286 |
ctaatttaatatccgaacaacatatttggggtgcagtggatcctaatgcaaagaatgaagcattcaactgcagcaatggcgatgttttcaggtggaaaca |
385 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5399817 |
ctaatttaatatccgaacaacatatttggggtgcagtggatcctaatgcaaagaatgaagcattcaactgcagcaatggcgatgttttcaggtggaaaca |
5399718 |
T |
|
| Q |
386 |
tttgtggaaggtgttagcagaacggtttgagatcgatg |
423 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
5399717 |
tttgtggaaggtgttagcagaacggtttgagatcgatg |
5399680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 53 - 423
Target Start/End: Complemental strand, 5394869 - 5394499
Alignment:
| Q |
53 |
acatacactattatataattagatgaactatatttttattcaggtgggtaagaaaaaaggaatgacatggttcattaatcgaccacaagttatctttgga |
152 |
Q |
| |
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||||||| ||||||||||||| |||||| |||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |
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| T |
5394869 |
acatacattattatataattaaatgaacaatatatttgttcaggtgggtaagaaaaaaggaacgacatggttcattaatcgaccacaccccatctttgga |
5394770 |
T |
|
| Q |
153 |
ttttcaccttacagcatgatgaacctcattggcacgctttgtgtttacgctgcaatttgcaagcatgagggtcttccattaaggtttcctggctcaaaag |
252 |
Q |
| |
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||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
5394769 |
ttttcaccttatagcatgatgaacgtcattggcacgctttgtgtttacgccgcaatttgcaagcatgagggtcttcctttaaggtttcctggctcaaaag |
5394670 |
T |
|
| Q |
253 |
ctgcatgggaatgttattcaacagcttcagatgctaatttaatatccgaacaacatatttggggtgcagtggatcctaatgcaaagaatgaagcattcaa |
352 |
Q |
| |
|
||||||||| |||||||| || ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |
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| T |
5394669 |
gtgcatgggagtgttattctactgcttcagatgctaatttaatagccgaacaacatatttggggtgcagcggatcctaacgcaaagaatgaagcattcaa |
5394570 |
T |
|
| Q |
353 |
ctgcagcaatggcgatgttttcaggtggaaacatttgtggaaggtgttagcagaacggtttgagatcgatg |
423 |
Q |
| |
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||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5394569 |
ttgcagtaatggtgatgttttcaagtggaaacatttgtggaaggtgttagcagaacggtttgagatcgatg |
5394499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 9e-34; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 144 - 397
Target Start/End: Complemental strand, 3819103 - 3818850
Alignment:
| Q |
144 |
atctttggattttcaccttacagcatgatgaacctcattggcacgctttgtgtttacgctgcaatttgcaagcatgagggtcttccattaaggtttcctg |
243 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||||| || |||||||||||||||||||||| |||||||||||| |||| || || ||||| | |
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| T |
3819103 |
atctttggattttcaccttacagtatgatgaatatcattggaactatttgtgtttacgctgcaatttgtaagcatgagggtgttccgttgagatttccag |
3819004 |
T |
|
| Q |
244 |
gctcaaaagctgcatgggaatgttattcaacagcttcagatgctaatttaatatccgaacaacatatttggggtgcagtggatcctaatgcaaagaatga |
343 |
Q |
| |
|
| | || || ||||| ||| | | ||||| ||||| |||| || | |||||||||||||||| ||||||||||||| |||| |||||||| |
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| T |
3819003 |
ggactaagttagcttgggagaattactacatggcttctgatgcagatttgattgctgaacaacatatttgggctgcagtggatccttatgctaagaatga |
3818904 |
T |
|
| Q |
344 |
agcattcaactgcagcaatggcgatgttttcaggtggaaacatttgtggaaggt |
397 |
Q |
| |
|
||||||||| || || ||||| |||||||| |||||||| || ||||||||||| |
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|
| T |
3818903 |
agcattcaattgtagtaatggtgatgtttttaggtggaagcaattgtggaaggt |
3818850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 144 - 397
Target Start/End: Original strand, 47338774 - 47339027
Alignment:
| Q |
144 |
atctttggattttcaccttacagcatgatgaacctcattggcacgctttgtgtttacgctgcaatttgcaagcatgagggtcttccattaaggtttcctg |
243 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||||| || |||||||||||||||||||||| |||||||||||| |||| || || ||||| | |
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|
| T |
47338774 |
atctttggattttcaccttacagtatgatgaatatcattggaactatttgtgtttacgctgcaatttgtaagcatgagggtgttccgttgagatttccag |
47338873 |
T |
|
| Q |
244 |
gctcaaaagctgcatgggaatgttattcaacagcttcagatgctaatttaatatccgaacaacatatttggggtgcagtggatcctaatgcaaagaatga |
343 |
Q |
| |
|
| | || || ||||| ||| | | ||||| |||||| |||| || | || ||||||||||||| ||||||||||||| |||| |||||||| |
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|
| T |
47338874 |
ggactaagttagcttgggagaattactacatggcttctgatgctgatttgattgctgagcaacatatttgggctgcagtggatccttatgctaagaatga |
47338973 |
T |
|
| Q |
344 |
agcattcaactgcagcaatggcgatgttttcaggtggaaacatttgtggaaggt |
397 |
Q |
| |
|
||||||||| || || ||||| |||||||| |||||||| || ||||||||||| |
|
|
| T |
47338974 |
agcattcaattgtagtaatggtgatgtttttaggtggaagcaattgtggaaggt |
47339027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 133 - 414
Target Start/End: Original strand, 47347233 - 47347514
Alignment:
| Q |
133 |
gaccacaagttatctttggattttcaccttacagcatgatgaacctcattggcacgctttgtgtttacgctgcaatttgcaagcatgagggtcttccatt |
232 |
Q |
| |
|
|||| |||||||| ||||||||||||||||| || ||||||| ||| |||| || ||||||||||| ||||||||||||||||| || ||| |||| || |
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|
| T |
47347233 |
gacctcaagttatatttggattttcaccttatagtttgatgaatctcgttggtacactttgtgtttatgctgcaatttgcaagcacgaaggtgttccgtt |
47347332 |
T |
|
| Q |
233 |
aaggtttcctggctcaaaagctgcatgggaatgttattcaacagcttcagatgctaatttaatatccgaacaacatatttggggtgcagtggatcctaat |
332 |
Q |
| |
|
| ||||| || |||| | || ||||| | |||||| ||||| ||||| |||| || | || ||||||||||||| |||||||||||| || |
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| T |
47347333 |
gaaatttcccggtacaaagggagcttgggagtcttattctgtggcttctgatgcggatttgattgcagagcaacatatttgggccgcagtggatccttat |
47347432 |
T |
|
| Q |
333 |
gcaaagaatgaagcattcaactgcagcaatggcgatgttttcaggtggaaacatttgtggaaggtgttagcagaacggtttg |
414 |
Q |
| |
|
|| ||||| ||||| || ||||| |||||||| |||||||| || |||||||| | |||||||| || || |||| ||||| |
|
|
| T |
47347433 |
gctaagaacgaagcttttaactgtagcaatggtgatgtttttagatggaaacaactatggaaggttttggcggaacagtttg |
47347514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 303 - 397
Target Start/End: Original strand, 47349942 - 47350036
Alignment:
| Q |
303 |
caacatatttggggtgcagtggatcctaatgcaaagaatgaagcattcaactgcagcaatggcgatgttttcaggtggaaacatttgtggaaggt |
397 |
Q |
| |
|
||||| ||||||| |||||||||| || |||| ||||||||||| ||||| || |||||||| |||||||| ||||||||||| ||||||||||| |
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|
| T |
47349942 |
caacacatttgggctgcagtggatacttatgctaagaatgaagcgttcaattgtagcaatggtgatgtttttaggtggaaacaattgtggaaggt |
47350036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 144 - 220
Target Start/End: Original strand, 47349783 - 47349859
Alignment:
| Q |
144 |
atctttggattttcaccttacagcatgatgaacctcattggcacgctttgtgtttacgctgcaatttgcaagcatga |
220 |
Q |
| |
|
||||||||||| ||||||||||| ||||||| | ||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
47349783 |
atctttggattctcaccttacagtttgatgaatgttgttggcacgctttgcctttacgctgcaatttgcaagcatga |
47349859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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