View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16284_low_5 (Length: 420)
Name: NF16284_low_5
Description: NF16284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16284_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 331; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 46 - 405
Target Start/End: Complemental strand, 34956312 - 34955953
Alignment:
| Q |
46 |
gatacatatcaggcacatcaatggtaacgttagcagcatagaaaactttactttaaataccctctcttgaatcggaattcattgcaacaaagattcaatt |
145 |
Q |
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| T |
34956312 |
gatacatatcaggcacatcaatggtaacgttagcagcatagaaaactttactttaaataccctctcttgaatcggaattcattgcaagaaagattcaatt |
34956213 |
T |
|
| Q |
146 |
ctaaattaaatacaaaaaagcagagatgaatatcctaagcacttcatgccaaaaacttgtgtgtctaagcaaatcaatatatatctcagcagcatgttta |
245 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34956212 |
ctaaattaaatacaaaaaagcagagatgaatatcctaagcacttcatgccaaaaacttgtgtgtctaagcaaatcaatatatatctcagcagcatgttta |
34956113 |
T |
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| Q |
246 |
tatcgattcatcctcctaagatcaaacccactatgtgttcaaattgtatatttcatatccatttcaactttgggttttggatttctcaaagctcttaaac |
345 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
34956112 |
tatcgattcatcctcctaagatcaaacccactatgtgttcaaattgtatatttcatatccatttcaactttgggttttggatttctcaaagctctaaaac |
34956013 |
T |
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| Q |
346 |
ccttaggtcaaacacnnnnnnntttagatttgttcttcacatccgtttcatccaccacag |
405 |
Q |
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| T |
34956012 |
ccttaggtcaaacacaaaaaaatttagatttgttcttcacatccgtttcatccaccacag |
34955953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 215 - 405
Target Start/End: Complemental strand, 34974605 - 34974415
Alignment:
| Q |
215 |
caaatcaatatatatctcagcagcatgtttatatcgattcatcctcctaagatcaaacccactatgtgttcaaattgtatatttcatatccatttcaact |
314 |
Q |
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| T |
34974605 |
caaatcaatttttttcttagcagcatgtttttgtcgcttcatcctcctaagagcaaacccattatgggttcaaattgtatatttcacatctctttcaact |
34974506 |
T |
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| Q |
315 |
ttgggttttggatttctcaaagctcttaaacccttaggtcaaacacnnnnnnntttagatttgttcttcacatccgtttcatccaccacag |
405 |
Q |
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| T |
34974505 |
ttgggttttggatttctcaaagttctaaaacctttaggtgaaacacctaaaaatttagatttgttcttcacatccatttcagccaccacag |
34974415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 239 - 405
Target Start/End: Complemental strand, 35035308 - 35035139
Alignment:
| Q |
239 |
atgtttatatcgattcatcctcctaagatcaaacccactatgtgttcaaattgtatatttcatatccatttcaactttgggttttggatttctcaaagct |
338 |
Q |
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|||||| ||||| ||||||||||||||| |||| ||| |||||||||||||| |||||||||| || ||||| ||| || |||||||||||||||||| |
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| T |
35035308 |
atgtttttatcgcttcatcctcctaagagcaaatccattatgtgttcaaattctatatttcatctctatttccttttttgggtttggatttctcaaagct |
35035209 |
T |
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| Q |
339 |
cttaaacccttaggtcaaa---cacnnnnnnntttagatttgttcttcacatccgtttcatccaccacag |
405 |
Q |
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|| || || ||| ||||| ||| ||||||||||||||||||||||||||||||||||||| |
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| T |
35035208 |
ctaaaccctttatatcaaacatcacctaaaaacttagatttgttcttcacatccgtttcatccaccacag |
35035139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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