View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16284_low_7 (Length: 366)
Name: NF16284_low_7
Description: NF16284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16284_low_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 17 - 359
Target Start/End: Complemental strand, 1493607 - 1493265
Alignment:
| Q |
17 |
caggtacaccatcaactgcagcctttgctttgatcactgtgtcaaatccatcaccagctagtgaaagattaattggattatctttttctgaagtgctgtt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1493607 |
caggtacaccatcaactgcagcctttgctttgatcactgtgtcaaatccatcaccagctagtgaaagattaattggattatctttttctgaagtgctgtt |
1493508 |
T |
|
| Q |
117 |
tcttgtagctaacatcacagaagcatcacatccctgtccacacatatacaaacacatcattataaagtttaatagcaactaatgtaaaacacagagtccg |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
1493507 |
tcttgtagctaacatcacagaagcatcacatccctgtccacacatatacaaacacatcattataaagtttaatagtaactaatgtaaaacacagagtccg |
1493408 |
T |
|
| Q |
217 |
acacagacacttgacacaacacagatacacgtcgacactgctaattccaaaaacatagaacactgacctgaacaaaacaatcatggaagaagagcctaag |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1493407 |
acacagacacttgacacaacacagatacacgtcgacactgctaattccaaaaacattgaacactgacctgaacaaaacaatcatggaagaagagcctaag |
1493308 |
T |
|
| Q |
317 |
tgtagcaggtgctgtaacaaatgtttgctgaagtttcatctca |
359 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1493307 |
tgtagcaggtgctgtaacaaatgtttgctgaagtttcatctca |
1493265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 282 - 353
Target Start/End: Complemental strand, 39800609 - 39800538
Alignment:
| Q |
282 |
acctgaacaaaacaatcatggaagaagagcctaagtgtagcaggtgctgtaacaaatgtttgctgaagtttc |
353 |
Q |
| |
|
|||||||||||||||||||| |||||||| | ||| |||||||| | |||||||| ||||| |||| |||| |
|
|
| T |
39800609 |
acctgaacaaaacaatcatgaaagaagagacgaagggtagcaggaacagtaacaaaagtttgttgaaatttc |
39800538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 74
Target Start/End: Complemental strand, 39800838 - 39800797
Alignment:
| Q |
33 |
tgcagcctttgctttgatcactgtgtcaaatccatcaccagc |
74 |
Q |
| |
|
|||||| |||||||| |||||||||||||| ||||||||||| |
|
|
| T |
39800838 |
tgcagcttttgctttaatcactgtgtcaaaaccatcaccagc |
39800797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 348
Target Start/End: Complemental strand, 53053645 - 53053585
Alignment:
| Q |
288 |
acaaaacaatcatggaagaagagcctaagtgtagcaggtgctgtaacaaatgtttgctgaa |
348 |
Q |
| |
|
|||||||||||||||||||| || ||||| || ||||| || || ||||||||||| |||| |
|
|
| T |
53053645 |
acaaaacaatcatggaagaaaagtctaagagtggcaggagcagtgacaaatgtttgttgaa |
53053585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University