View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16284_low_8 (Length: 366)
Name: NF16284_low_8
Description: NF16284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16284_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 19 - 360
Target Start/End: Original strand, 5685063 - 5685404
Alignment:
| Q |
19 |
ttgattgggaaggagaatttgcctaaatggattaaagctgccagtttacagaatttgatatttccttatgataatatggataagattgtgaggagggata |
118 |
Q |
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| T |
5685063 |
ttgattgggaaggagaatttgcctaaatggattaaagctgccagtttacagaatttgatatttccttatgataatatggataagattgtgaggagggata |
5685162 |
T |
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| Q |
119 |
gagaaggacctgtcaagtaagttataattttacttcaatgttcgcgtaggttataattttgatattatgttggtataagttcttattgtatgtaatgtaa |
218 |
Q |
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| T |
5685163 |
gagaaggacctgtcaagtaagttataattttacttcaatgttcgcgtaggttataattttgatattatgttggtgtaagttcttattgcatgtaatgtaa |
5685262 |
T |
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| Q |
219 |
aatttcatgtacttacaaattacaatagattttgataactatgcacttacaccgccgttcaatcaaattttactatgtaggtatttgttgagatatttta |
318 |
Q |
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| T |
5685263 |
aatttcatgtacttacaaattacaatagattttgataactatgcacttacaccgccgttcaatcaaattttactatgtaggtatttgttgagatatttta |
5685362 |
T |
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| Q |
319 |
ataaacgatatcactttaccgagttagctatattcttctcac |
360 |
Q |
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| T |
5685363 |
ataaacgatatcactttaccgagttagctatattcttctcac |
5685404 |
T |
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