View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16285_high_1 (Length: 569)
Name: NF16285_high_1
Description: NF16285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16285_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 543; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 1 - 559
Target Start/End: Complemental strand, 9121547 - 9120989
Alignment:
| Q |
1 |
agtgtatataacccaatgttgaccatcaatattcaccttaagaccatgaattttagcaaataaatcaacagctcttctaacccctttattatcagcagca |
100 |
Q |
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| T |
9121547 |
agtgtatataacccaatgttgaccatcaatattcaccttaagaccatgaattttagcaaataaatcaacagctcttctaacccctttattatcagcagca |
9121448 |
T |
|
| Q |
101 |
gtaaaataatcatgcccaaaaataaccccacccggtcgaagaatccgaaaaccccggtttatatcagaccaagctgataaaaaatcatgacctgcatcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
9121447 |
gtaaaataatcatgcccaaaaataaccccacccggtcgaagaatccgaaaaccccggtttatatcagaccaagccgataaaaaatcatgacctgcatcaa |
9121348 |
T |
|
| Q |
201 |
tctcaaccaaatcggcccaaacaccccatgcacatagcttcgtcaaagccgaaccgcttgaatacggaaccggtaaaaccgaaccggtgtgattataact |
300 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9121347 |
tctcaaccaaatcggcccaaacaccccattcacatagcttcgtcaaagccgaaccgcttgaatacggaaccggtaaaaccgaaccggtgtgattataact |
9121248 |
T |
|
| Q |
301 |
aacaacattcataagaaactgataataaagcaaaacatcaccgtttaaacttggaatatttttgaacttgtctctgaacccggcccaaccacgaaaatca |
400 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
9121247 |
aacaacattcataagaaactgataataaagcaaaacgtcaccgtttaaacttggaatatttttgaacttgtctcggaacccggcccaaccacgaaaatca |
9121148 |
T |
|
| Q |
401 |
tcgatacatagaatctgagtttttaaaccgaaccgttgagttaactcggccatgtgaaccgctgaagctccaaggaacgttccaacttcaacgatgattt |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9121147 |
tcgatacatagaatctgagtttttaaaccgaaccgttgagttaactcggccatgtgaaccgctgaagctccaaggaacgttccaacttcaacgatgattt |
9121048 |
T |
|
| Q |
501 |
ttggtttcactttacgaattaagttttcgaaaacggcaccgtttgaaccccagcctttg |
559 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9121047 |
ttggtttcactttacgaattaagttttcgaaaacggcaccgtttgaaccccagcctttg |
9120989 |
T |
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