View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16285_high_2 (Length: 418)
Name: NF16285_high_2
Description: NF16285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16285_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 56 - 409
Target Start/End: Original strand, 11212187 - 11212540
Alignment:
| Q |
56 |
tatcacagcgtgcataggggtactaaatactcctgccaagccagactccaaatttcatcttcccacctggttaatgttgttgcatagtcacccatgccaa |
155 |
Q |
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| T |
11212187 |
tatcacagcgtgcataggggtactaaatactcctgccaagccagactccaaatttcatcttcccacctggttaatgttgttgcatagtcacccatgccaa |
11212286 |
T |
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| Q |
156 |
ttcagaggaatttacattagctactcatttgttcaattcctttattgtcatctgctgtgtccttgttgctgtctcctccaacttcagccagtttctcatc |
255 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11212287 |
ttcagaggaatttacattagctactcatttgttcaattcctttattgtcatctgctgtgtccttgttgctgtctcctccaacttcagccagtttctcatc |
11212386 |
T |
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| Q |
256 |
cacagaactggatgcggacgaacttggattttcactttctgtttgagttgggacagaggatccaatgctcagattctcgtccagtgatgctaatagtgca |
355 |
Q |
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| T |
11212387 |
cacagaactggatgcggacgaacttggattttcactttctgtttgagttgggacagaggatccaatgctcagattctcgtccagtgatgctaatagtgca |
11212486 |
T |
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| Q |
356 |
gcatccgtatgttcatcctttgttactgtaacattggttgacggagatgatgat |
409 |
Q |
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| T |
11212487 |
gcatccgtatgttcatcctttgttactgtaacattggttgacggagatgatgat |
11212540 |
T |
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