View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16285_high_3 (Length: 411)
Name: NF16285_high_3
Description: NF16285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16285_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 18 - 391
Target Start/End: Complemental strand, 8976110 - 8975742
Alignment:
| Q |
18 |
atcttgggggtgcctctcatagttaaggttctannnnnnnaatttgtcaagtagtttaatagttaaaaatttacctttaataacgaataagtgagaaatt |
117 |
Q |
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| T |
8976110 |
atcttgggggtgcctctcatagttaaggttctatttttttaatttgtcaagtagtttaatggttaaaaatttacctttaataacgaataagtgagaaatc |
8976011 |
T |
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| Q |
118 |
cgagattcaaacaccgatccttacatatattatgacatcttcctaccaattaaattaaactcacgaagacagttaaggtcctatttaactaaatcacata |
217 |
Q |
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| T |
8976010 |
caagattcaaacaccgacccttacatatattatgacatgttcctaccaactaaattaaactcacgaagacaattaaggtcctatttaactaaatcccata |
8975911 |
T |
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| Q |
218 |
ttattatttgtcattttttatcgtgatttagcaaaacatgcagaactnnnnnnnnnnnnntatcacgtttaattgaaatatttgtttgtcttatattatt |
317 |
Q |
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| T |
8975910 |
ttattatttgtcattttttatcgtgatttagcaaaagatgcagaact-----aaaaaaaatatcacgtttaattgaaatatttgtttgtcttgtattatt |
8975816 |
T |
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| Q |
318 |
tgttattttatccatacatgcttttagaagaggagtgtgtttctggagttgaagcatgcaaaaacaaccttaac |
391 |
Q |
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| T |
8975815 |
tgttattttatccatacatgcttttagaggaggagtgtgtttctggagttgaagcatgcaaaaacaaccttaac |
8975742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 285 - 317
Target Start/End: Complemental strand, 8970877 - 8970845
Alignment:
| Q |
285 |
tttaattgaaatatttgtttgtcttatattatt |
317 |
Q |
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| T |
8970877 |
tttatttgaaatatttgtttgtcttatattatt |
8970845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 102 - 146
Target Start/End: Original strand, 37140284 - 37140328
Alignment:
| Q |
102 |
gaataagtgagaaattcgagattcaaacaccgatccttacatata |
146 |
Q |
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| T |
37140284 |
gaataagtgagatattcgggattcaaacaccgattcatacatata |
37140328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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