View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16285_high_4 (Length: 390)
Name: NF16285_high_4
Description: NF16285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16285_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 375
Target Start/End: Original strand, 24263489 - 24263864
Alignment:
| Q |
1 |
ctttattactatatagaaacacagttatcaattggtaccaacttgaagaaatgtagctaactatttaaaacactggatctttccttgtgaattttcattt |
100 |
Q |
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| T |
24263489 |
ctttattactatgtagaaacacagttatcaattggtaccaacttgaagaaatgtagctaactatttagaacactggatctttccttgtgaattttcattt |
24263588 |
T |
|
| Q |
101 |
ctgatatacaatgaaactctcatcatttattgcgtttgtttggctgaatatgcaagtaggtattatagatgctggttagacaaaatgattgagttggctt |
200 |
Q |
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| T |
24263589 |
ctgatatacaaggaaactctcattatttattgcgtttgtttggctgaatatgcaagtaggtattatagatgctggttagacaaaatgattgagttggctt |
24263688 |
T |
|
| Q |
201 |
ctaattctatgaatctataggccttatttatttggtatttctatgatattatcttacattgtgaattagg-agacaggagtattttactcaatgatttag |
299 |
Q |
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| T |
24263689 |
ctaatactatgaatctataggccttatttatttggtatttctatgatattatcttacattgtgaattaggaagacaggagtattttactcaatgatttag |
24263788 |
T |
|
| Q |
300 |
gaaacatacttttcttttcacatagttggtatcaaaggattacttctaaaggtacagcgcgtgtcgccgaagaaaa |
375 |
Q |
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| T |
24263789 |
gaaacatacttttcttttcacatagttggtatcaaaggattacttctaaaggtacagcgcgtgtcgccgaagaaaa |
24263864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 164 - 203
Target Start/End: Complemental strand, 24838623 - 24838584
Alignment:
| Q |
164 |
tatagatgctggttagacaaaatgattgagttggcttcta |
203 |
Q |
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| T |
24838623 |
tatatatgctggttaaacaaaatgattgagttggcttcta |
24838584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 163 - 219
Target Start/End: Original strand, 11546199 - 11546255
Alignment:
| Q |
163 |
ttatagatgctggttagacaaaatgattgagttggcttctaattctatgaatctata |
219 |
Q |
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|||| |||| |||||||||||||||||||||||||||| ||||| |||||||||||| |
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| T |
11546199 |
ttattgatggtggttagacaaaatgattgagttggcttttaattttatgaatctata |
11546255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 146 - 219
Target Start/End: Complemental strand, 11562309 - 11562237
Alignment:
| Q |
146 |
gaatatgcaagtaggtattatagatgctggttagacaaaatgattgagttggcttctaattctatgaatctata |
219 |
Q |
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| T |
11562309 |
gaatatgcaagtagtt-ttatcaatggtggttagacaaaatgattgagtttgctttttattttatgaatctata |
11562237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 219
Target Start/End: Original strand, 11550955 - 11551001
Alignment:
| Q |
173 |
tggttagacaaaatgattgagttggcttctaattctatgaatctata |
219 |
Q |
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| T |
11550955 |
tggttcgacaaaatgattgagttggcttttaattttatgaatatata |
11551001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 86
Target Start/End: Complemental strand, 22687903 - 22687830
Alignment:
| Q |
13 |
atagaaacacagttatcaattggtaccaacttgaagaaatgtagctaactatttaaaacactggatctttcctt |
86 |
Q |
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||||||||| |||||||||||||||| |||| || ||||||| | ||||||| |||| ||||||||||||| |
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| T |
22687903 |
atagaaacatagttatcaattggtactttcttgtaggaatgtagtcagctatttagaacagtggatctttcctt |
22687830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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