View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16285_low_2 (Length: 520)
Name: NF16285_low_2
Description: NF16285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16285_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 470; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 10 - 499
Target Start/End: Complemental strand, 41820594 - 41820106
Alignment:
| Q |
10 |
gcaaaggcacacagcagcttcaagattagcaagaccatcaatgagagagcagcatggtgtctttggtggcttaccaagctcaacattaatcaaacccaat |
109 |
Q |
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| T |
41820594 |
gcaaaggcacacagcagcttcaagattagcaagaccatcaatgagagagcagcatggtgtctttggtggcttaccaagctcaacattaatcaaacccaat |
41820495 |
T |
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| Q |
110 |
acatcagcacacacaccaaacttgattgtgtctctagggcatgttgggtttttggaggaaggtggatgatgagggtgcgagtggccgtgatctttgtgag |
209 |
Q |
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| T |
41820494 |
acatcagcacacacaccaaacttgattgtgtctctagggcatgttgggtttttggaggaaggtggatgatgagggtgtgagtggccgtgatctttgtgag |
41820395 |
T |
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| Q |
210 |
gtggtgggggacatggaacatatgtggagcttaccacagtgaaaaatatgatgttgaggcaaaggagcatagcaaccttggaagccatttggattaatga |
309 |
Q |
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| T |
41820394 |
gtggtgggggacatggaacatatgtggagcttaccacagtgaaaaatatgatgttgaggcaaaggagcatagcaaccttggaagccatttggattaatga |
41820295 |
T |
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| Q |
310 |
ttaagattaaggtgctaatactcttagtttgatttggtgtgtgagtgagtgatgatgtttgagaggaataagagggggttttatagggaaggattggtga |
409 |
Q |
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| T |
41820294 |
ttaagattaaggtgctaatactcttagtttgatttggtgtgtgagtgagtgatgatgtttgaga-gaataagaggggattttatagggaaggattggtga |
41820196 |
T |
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| Q |
410 |
atttgttgattataataactggtttatttggacgcccatgtgagttactgagggagcccattgagtggaaacttgattagtcatcagcac |
499 |
Q |
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| T |
41820195 |
atttgttgattataataactggtttatttggaggcccatgtgagttactgagggagcccattgagtggaaacttgattagtcatcagcac |
41820106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 190 - 467
Target Start/End: Original strand, 44829888 - 44830163
Alignment:
| Q |
190 |
gtggccgtgatctttgtgaggtggtgggggacatggaacatatgtggagcttaccacagtgaaaaatatgatgttgaggcaaaggagcatagcaaccttg |
289 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
44829888 |
gtggctgtgatctttgtgaggtggtgggggacatggaacatatgttgagcttaccacagtgaaaaataggatgttgaggcaaaggagcatagcaaccttg |
44829987 |
T |
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| Q |
290 |
gaagccatttggattaatgattaagattaaggtgctaatactc-ttagtttgatttggtgt----gtgagtgagtgatgatgtttgagaggaataagagg |
384 |
Q |
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| T |
44829988 |
gaagccatttgga---------atgattgaggtgctaatactctttagtttgatttggtgtatgagtgagtgagtgatgatgtttgagaggaataagagg |
44830078 |
T |
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| Q |
385 |
gggttttataggg--aaggattggtgaatttgttgattataataactggtttatttggacgcccatgtgagttactgagggagcc |
467 |
Q |
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| T |
44830079 |
gggctttatagggaaaaggattggtgaatttgttgattaaaataactggtttatttggaggcccatgtgagtaactcagtgagcc |
44830163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 10 - 163
Target Start/End: Original strand, 44829735 - 44829888
Alignment:
| Q |
10 |
gcaaaggcacacagcagcttcaagattagcaagaccatcaatgagagagcagcatggtgtctttggtggcttaccaagctcaacattaatcaaacccaat |
109 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
44829735 |
gcaaaggcacacagcagcttcaagattagcaagatcatcaatgagagagcagcatggtgtctttggtggcttaccaagttcaacattaatcaaacccaat |
44829834 |
T |
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| Q |
110 |
acatcagcacacacaccaaacttgattgtgtctctagggcatgttgggtttttg |
163 |
Q |
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| T |
44829835 |
acatcagcacacacaccaaacttaattgtgtctctaggacaagttgggtgtttg |
44829888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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