View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16285_low_8 (Length: 245)

Name: NF16285_low_8
Description: NF16285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16285_low_8
NF16285_low_8
[»] chr3 (9 HSPs)
chr3 (1-159)||(24263283-24263441)
chr3 (14-66)||(15806482-15806533)
chr3 (16-72)||(28135826-28135882)
chr3 (19-77)||(17796593-17796651)
chr3 (19-77)||(19105033-19105091)
chr3 (191-242)||(24263202-24263253)
chr3 (21-66)||(3041200-3041244)
chr3 (21-66)||(18013924-18013968)
chr3 (119-159)||(41671470-41671510)
[»] chr1 (2 HSPs)
chr1 (14-72)||(18337491-18337549)
chr1 (119-159)||(12513562-12513602)
[»] chr7 (3 HSPs)
chr7 (21-71)||(23618589-23618638)
chr7 (14-72)||(26565597-26565655)
chr7 (32-65)||(8254285-8254318)
[»] scaffold0534 (1 HSPs)
scaffold0534 (119-159)||(961-1001)
[»] chr8 (2 HSPs)
chr8 (119-159)||(17566389-17566429)
chr8 (16-71)||(1018233-1018287)
[»] chr4 (4 HSPs)
chr4 (119-159)||(6346753-6346793)
chr4 (14-66)||(24719619-24719670)
chr4 (18-81)||(6347026-6347087)
chr4 (126-159)||(24719866-24719899)
[»] chr5 (4 HSPs)
chr5 (14-81)||(43005904-43005970)
chr5 (125-159)||(26021608-26021642)
chr5 (119-159)||(19979859-19979899)
chr5 (33-81)||(26021395-26021442)
[»] chr2 (3 HSPs)
chr2 (20-66)||(31023331-31023376)
chr2 (126-159)||(16767084-16767117)
chr2 (126-159)||(16767221-16767254)


Alignment Details
Target: chr3 (Bit Score: 151; Significance: 5e-80; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 24263441 - 24263283
Alignment:
Q  1 gtttgattgggtctcctagtaaaatcgcacaaaaatcgtgaaatccatacaaaatcgtaggatttttaagggattttgaagaatgaataaatacaattta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  24263441 gtttgattgggtctcctagtaaaatcgcacaaaaatcgtgaaatccatacaaaattgtaggatttttaagggattttgaagaatgaataaatacaattta 24263342  T
Q  101 atatatcacagaggttcatttacaattttcgattttgctcttcccttttgacctgaagc 159  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24263341 atatgtcacagaggttcatttacaattttcgattttgctcttcccttttgacctgaagc 24263283  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 15806533 - 15806482
Alignment:
Q  14 tcctagtaaaatcgcacaaaaatcgtgaaatccatacaaaatcgtaggatttt 66  Q
    ||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  15806533 tcctagtaaaatcgcacaaaa-tcgtgaaatccatacaaaatcgcaggatttt 15806482  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 28135826 - 28135882
Alignment:
Q  16 ctagtaaaatcgcacaaaaatcgtgaaatccatacaaaatcgtaggatttttaaggg 72  Q
    ||||||||||| ||  |||||||| ||||||||||||||||| |||||||| |||||    
T  28135826 ctagtaaaatcacatcaaaatcgtaaaatccatacaaaatcgaaggattttaaaggg 28135882  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 17796593 - 17796651
Alignment:
Q  19 gtaaaatcgcacaaaaatcgtgaaatccatacaaaatcgtaggatttttaagggatttt 77  Q
    ||||||||| |  |||||||||||||||||||||||| | |||||||| ||||| ||||    
T  17796593 gtaaaatcgtatcaaaatcgtgaaatccatacaaaattgcaggattttaaagggttttt 17796651  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 19105033 - 19105091
Alignment:
Q  19 gtaaaatcgcacaaaaatcgtgaaatccatacaaaatcgtaggatttttaagggatttt 77  Q
    ||||||||| |  |||||||||||||||||||||||| | |||||||| ||||| ||||    
T  19105033 gtaaaatcgtatcaaaatcgtgaaatccatacaaaattgcaggattttaaagggttttt 19105091  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 242
Target Start/End: Complemental strand, 24263253 - 24263202
Alignment:
Q  191 agtattcctgtcacacnnnnnnncattatgcaacatttattaagaataattt 242  Q
    ||||||||||||||||       |||||||||||||||||||||||||||||    
T  24263253 agtattcctgtcacacaaaaaaacattatgcaacatttattaagaataattt 24263202  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 3041200 - 3041244
Alignment:
Q  21 aaaatcgcacaaaaatcgtgaaatccatacaaaatcgtaggatttt 66  Q
    |||||||||||||| ||||||||||||| |||||||| ||||||||    
T  3041200 aaaatcgcacaaaa-tcgtgaaatccattcaaaatcgcaggatttt 3041244  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 18013924 - 18013968
Alignment:
Q  21 aaaatcgcacaaaaatcgtgaaatccatacaaaatcgtaggatttt 66  Q
    |||||||||||||| |||||||||||||  ||||||||||||||||    
T  18013924 aaaatcgcacaaaa-tcgtgaaatccatttaaaatcgtaggatttt 18013968  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 159
Target Start/End: Original strand, 41671470 - 41671510
Alignment:
Q  119 tttacaattttcgattttgctcttcccttttgacctgaagc 159  Q
    ||||||||| ||||||||||||||| |||| ||||||||||    
T  41671470 tttacaattatcgattttgctcttctctttcgacctgaagc 41671510  T

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Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 14 - 72
Target Start/End: Complemental strand, 18337549 - 18337491
Alignment:
Q  14 tcctagtaaaatcgcacaaaaatcgtgaaatccatacaaaatcgtaggatttttaaggg 72  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||||| |||||    
T  18337549 tcctagtaaaatcgcatcaaaatcgtgaaatccatacaaaatcgtaggattttaaaggg 18337491  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 159
Target Start/End: Original strand, 12513562 - 12513602
Alignment:
Q  119 tttacaattttcgattttgctcttcccttttgacctgaagc 159  Q
    ||||||||| ||||||||||||||| |||||||||||||||    
T  12513562 tttacaattgtcgattttgctcttctcttttgacctgaagc 12513602  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 71
Target Start/End: Complemental strand, 23618638 - 23618589
Alignment:
Q  21 aaaatcgcacaaaaatcgtgaaatccatacaaaatcgtaggatttttaagg 71  Q
    |||||||||||||| ||||||||||||| ||||||||||||||||| ||||    
T  23618638 aaaatcgcacaaaa-tcgtgaaatccattcaaaatcgtaggattttgaagg 23618589  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 72
Target Start/End: Complemental strand, 26565655 - 26565597
Alignment:
Q  14 tcctagtaaaatcgcacaaaaatcgtgaaatccatacaaaatcgtaggatttttaaggg 72  Q
    ||||| ||||||||||  |||||| |||||| ||||||||||| ||||||||| |||||    
T  26565655 tcctactaaaatcgcatcaaaatcatgaaattcatacaaaatcctaggattttaaaggg 26565597  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 65
Target Start/End: Complemental strand, 8254318 - 8254285
Alignment:
Q  32 aaaatcgtgaaatccatacaaaatcgtaggattt 65  Q
    ||||||||||||||||| ||||||||||||||||    
T  8254318 aaaatcgtgaaatccattcaaaatcgtaggattt 8254285  T

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Target: scaffold0534 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0534
Description:

Target: scaffold0534; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 159
Target Start/End: Original strand, 961 - 1001
Alignment:
Q  119 tttacaattttcgattttgctcttcccttttgacctgaagc 159  Q
    ||||| |||||| ||||||||||||||||||||||||||||    
T  961 tttacgattttcaattttgctcttcccttttgacctgaagc 1001  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 159
Target Start/End: Original strand, 17566389 - 17566429
Alignment:
Q  119 tttacaattttcgattttgctcttcccttttgacctgaagc 159  Q
    ||||| |||||| ||||||||||||||||||||||||||||    
T  17566389 tttacgattttcaattttgctcttcccttttgacctgaagc 17566429  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 1018287 - 1018233
Alignment:
Q  16 ctagtaaaatcgcacaaaaatcgtgaaatccatacaaaatcgtaggatttttaagg 71  Q
    |||||||| |||||||| | |||| |||||||||||||||||||||||||| ||||    
T  1018287 ctagtaaagtcgcacaata-tcgtaaaatccatacaaaatcgtaggattttaaagg 1018233  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 159
Target Start/End: Complemental strand, 6346793 - 6346753
Alignment:
Q  119 tttacaattttcgattttgctcttcccttttgacctgaagc 159  Q
    ||||| |||||||||||||||||||||||| ||||||||||    
T  6346793 tttacgattttcgattttgctcttccctttcgacctgaagc 6346753  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 24719619 - 24719670
Alignment:
Q  14 tcctagtaaaatcgcacaaaaatcgtgaaatccatacaaaatcgtaggatttt 66  Q
    ||||||||||||||||| |||| |||||||| |||||||||||| ||||||||    
T  24719619 tcctagtaaaatcgcacgaaaa-cgtgaaatacatacaaaatcgcaggatttt 24719670  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 6347087 - 6347026
Alignment:
Q  18 agtaaaatcgcacaaaaatcgtgaaatccatacaaaatcgtaggatttttaagggattttgaag 81  Q
    ||||||||||||||||| ||||||||| || ||||||||| |||||||| ||||| ||||||||    
T  6347087 agtaaaatcgcacaaaa-tcgtgaaattcacacaaaatcgcaggattttaaaggg-ttttgaag 6347026  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 159
Target Start/End: Original strand, 24719866 - 24719899
Alignment:
Q  126 ttttcgattttgctcttcccttttgacctgaagc 159  Q
    ||||||||||||||||||||||| ||||||||||    
T  24719866 ttttcgattttgctcttccctttcgacctgaagc 24719899  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 81
Target Start/End: Complemental strand, 43005970 - 43005904
Alignment:
Q  14 tcctagtaaaatcgcacaaaaatcgtgaaatccatacaaaatcgtaggatttttaagggattttgaag 81  Q
    ||||| |||||||||   |||||| |||||| |||||||||||| |||||||||||||| ||||||||    
T  43005970 tcctaataaaatcgcgtcaaaatcatgaaattcatacaaaatcgcaggatttttaaggg-ttttgaag 43005904  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 159
Target Start/End: Original strand, 26021608 - 26021642
Alignment:
Q  125 attttcgattttgctcttcccttttgacctgaagc 159  Q
    |||||||||||||||||||||||||| ||||||||    
T  26021608 attttcgattttgctcttcccttttggcctgaagc 26021642  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 159
Target Start/End: Original strand, 19979859 - 19979899
Alignment:
Q  119 tttacaattttcgattttgctcttcccttttgacctgaagc 159  Q
    ||||| ||| ||||||||||||||| |||||||||||||||    
T  19979859 tttacgattgtcgattttgctcttctcttttgacctgaagc 19979899  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 81
Target Start/End: Original strand, 26021395 - 26021442
Alignment:
Q  33 aaatcgtgaaatccatacaaaatcgtaggatttttaagggattttgaag 81  Q
    ||||||||| ||||||||||||||| |||||||| ||||| ||||||||    
T  26021395 aaatcgtgacatccatacaaaatcgcaggattttaaaggg-ttttgaag 26021442  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 31023331 - 31023376
Alignment:
Q  20 taaaatcgcacaaaaatcgtgaaatccatacaaaatcgtaggatttt 66  Q
    ||||||||||||||| || ||||||| ||||||||||||||||||||    
T  31023331 taaaatcgcacaaaa-tcttgaaatctatacaaaatcgtaggatttt 31023376  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 159
Target Start/End: Original strand, 16767084 - 16767117
Alignment:
Q  126 ttttcgattttgctcttcccttttgacctgaagc 159  Q
    ||||||||||||||||||| ||||||||||||||    
T  16767084 ttttcgattttgctcttcctttttgacctgaagc 16767117  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 159
Target Start/End: Original strand, 16767221 - 16767254
Alignment:
Q  126 ttttcgattttgctcttcccttttgacctgaagc 159  Q
    ||||||||||||||||||| ||||||||||||||    
T  16767221 ttttcgattttgctcttcctttttgacctgaagc 16767254  T

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