View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16286_high_1_N (Length: 349)
Name: NF16286_high_1_N
Description: NF16286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16286_high_1_N |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 21 - 349
Target Start/End: Original strand, 35293293 - 35293623
Alignment:
| Q |
21 |
aaatggtggctttgtcttggccaaaatcaaatggattatggatgttgtcaaaatgtgttgttcatatgtcaatgaagcacttgaattactaaaa--agta |
118 |
Q |
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| T |
35293293 |
aaatggtggctttgtcttggccaaaatcaaatggattatggatgttgtcaaaatgtgttgttcatatgtcaatgaagcacttgaattactaaaaaaagta |
35293392 |
T |
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| Q |
119 |
catccatacataaatgactataatttataatagttttaaacaaacgttacatgtttttctttgaaataaaacaaaggtgttatagtcattttcatccatg |
218 |
Q |
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| T |
35293393 |
catccatacataaatgactataatttataatagttttaaacaaacgtcacatatttttctttgaaataaaataaaaggattatagtaattttcatccatg |
35293492 |
T |
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| Q |
219 |
aatgtttaacaaatagccgtaatagcctcttactgtatcgaaattacaaaatagttattgattgtccattttattatttgagtgtatattttcagttgca |
318 |
Q |
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| T |
35293493 |
aatgtttaatagatagccgtaatagcctcttactgtattgaaattataaaatagttattaattgtacattttattatttgagtgtatattttcagttgca |
35293592 |
T |
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| Q |
319 |
tttacattacatttagttaattacaagttac |
349 |
Q |
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| T |
35293593 |
tttacattacatttagttaattacaagttac |
35293623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 294 - 348
Target Start/End: Complemental strand, 28585008 - 28584955
Alignment:
| Q |
294 |
atttgagtgtatattttcagttgcatttacattacatttagttaattacaagtta |
348 |
Q |
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| T |
28585008 |
atttgagtgtaaattt-caattgcatttacattacatttagtttgttacaagtta |
28584955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 281
Target Start/End: Complemental strand, 8407300 - 8407219
Alignment:
| Q |
200 |
atagtcattttcatccatgaatgtttaacaaatagccgtaatagcctcttactgtatcgaaattacaaaatagttattgatt |
281 |
Q |
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| T |
8407300 |
atagtcattttcatccataaatgtgtaacgaataaccatattagtttctgaatgtatcaaaattttaaaatagttattgatt |
8407219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 308 - 348
Target Start/End: Complemental strand, 2519076 - 2519036
Alignment:
| Q |
308 |
tttcagttgcatttacattacatttagttaattacaagtta |
348 |
Q |
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| T |
2519076 |
tttcagttgcatttagattacatttagttagttataagtta |
2519036 |
T |
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