View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16286_high_4 (Length: 319)
Name: NF16286_high_4
Description: NF16286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16286_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 24 - 311
Target Start/End: Original strand, 2623742 - 2624028
Alignment:
| Q |
24 |
agagatttgttacgaaaagttgattttatgagaaaacttgcagatttttcacctttttaatttacaacaccacaagattcacagcaaatgcttcattttc |
123 |
Q |
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| T |
2623742 |
agagatttgttacgaaaagttgattttatgagaaaacttgcagatttttcacctttttaatttacaacaccacaagattcacagcaaatgcttcattttc |
2623841 |
T |
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| Q |
124 |
tttcaaaatggaggtgatttcttgaagtagtacttttcattttcttttaaattgcactctaaaataattttttgcttttaatatggaccacaccaattgg |
223 |
Q |
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| T |
2623842 |
tttcaaaatggaggtgatttcttgaagtagtacttttcattttcttttaaattgcactctaaaataattttttgcttttaatatggaccacaccaattgg |
2623941 |
T |
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| Q |
224 |
ctaccaatgagagtaatacttcaaagtaaggctttataaatagaagttagatattctaagaaaataaaggagaaaaagatcattgaac |
311 |
Q |
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| T |
2623942 |
ctaccaatgagagtaatacttcaaagtaaggctttataaatagaagttatatattctaag-aaataaaggagaaaaagatcattgaac |
2624028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 172 - 243
Target Start/End: Original strand, 2629693 - 2629763
Alignment:
| Q |
172 |
aaattgcactctaaaataattttttgcttttaatatggaccacaccaattggctaccaatgagagtaatact |
243 |
Q |
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| T |
2629693 |
aaattgtactcaaaaata-ttttttgcttttaatatggaccaaaccaattggctgccaatgagagtaatact |
2629763 |
T |
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