View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16286_low_1 (Length: 628)
Name: NF16286_low_1
Description: NF16286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16286_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-156; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 5 - 288
Target Start/End: Complemental strand, 41705742 - 41705459
Alignment:
| Q |
5 |
agtgagatgaaccgcagtctttggtttcaatggagtctaaagggcaatgagccattgtgcatagatcggaagagggggtggaactgtgtgctacagagca |
104 |
Q |
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| T |
41705742 |
agtgaaatgaaccgcagtctttggtttcaatggagtctaaagggcaatgagccattgtgcatagatcggaagagggggtggaactgtgtgctacagagca |
41705643 |
T |
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| Q |
105 |
tgcatgggagttgcatgaaatgggggtgctgtgggagatgttggtagggggagagggatccgaggtaagcttgggttttaattcacagaggatgcagttg |
204 |
Q |
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| T |
41705642 |
tgcatgggagttgcatgaaatgggggtgctgtgggagatgttggtagggggagagggatccgaggtaagcttgggttttaattcacagaggatgcagttg |
41705543 |
T |
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| Q |
205 |
aacggtgtgcatgggaaccaaacaaggtcacttcctgtgtccatgtagagagttatgggttgggagtggggtccgaggttgaag |
288 |
Q |
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| T |
41705542 |
aacggtgtgcatgggaaccaaacaaggtcacttcctgtgtccatgtagagagttatgggttgggagtggggtccgaggttgaag |
41705459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 348 - 616
Target Start/End: Complemental strand, 41705399 - 41705132
Alignment:
| Q |
348 |
tttatggcggtggaagcgtgataatgagtgagttgaggtggatttaaggaggtggtgggttgtgttgaattctattatggagagtgagtgtgttagaggt |
447 |
Q |
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| T |
41705399 |
tttatggcggtggaagcgtgataatgagtgagttgaggtggatttaaggaggtggtgggttgtgttgaattctatcatggagagtgagtgtgttagaggt |
41705300 |
T |
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| Q |
448 |
aatagtagcatttgagatgaagaatgtgaaatgaagagtgtgatgatgaggagaaataacaggggagaagccatttggttaaaca--gtatttgnnnnnn |
545 |
Q |
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| T |
41705299 |
aatagtagcatttgagatgaagaatgtgaaatgaagagtgtgatgaggaggagaaataacaggggagaagccatttggttaaacagggtatttg-ttttt |
41705201 |
T |
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| Q |
546 |
nngtgttggaacttgaatacagagagaggagaagagtttttgaatttgtagatggagtggtgtgtgatgat |
616 |
Q |
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| T |
41705200 |
ttgtgttggaacttgaatac--agagaggagaagagtttttgaatttgtagatggagtggtgtgtgatgat |
41705132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 186 - 266
Target Start/End: Original strand, 3744338 - 3744418
Alignment:
| Q |
186 |
ttcacagaggatgcagttgaacggtgtgcatgggaaccaaacaaggtcacttcctgtgtccatgtagagagttatgggttg |
266 |
Q |
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| T |
3744338 |
ttcacagagaatgcattcgaaaggtgaacaagggaaccaaacaaggtcgctacctgtgtccatgtagagtgttatgagttg |
3744418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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