View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16287_high_1_N (Length: 470)
Name: NF16287_high_1_N
Description: NF16287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16287_high_1_N |
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| [»] scaffold0299 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 1 - 430
Target Start/End: Original strand, 19781293 - 19781721
Alignment:
| Q |
1 |
acaagcttaaatgatgggatcacaacaatagtgccatcattgttacctgaaatcgagagatatatcattagcttgataatctacgagaaataaaaaatag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
19781293 |
acaagcttaaatgatgggatcacaacaatagtgccatcattgttacctgaaatcgagagatatatcattagcttgataatttacgagaaataaaaaatag |
19781392 |
T |
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| Q |
101 |
acggataatacaaactctcagtataatactaagaagttacaccactttttatnnnnnnnnttacttgttttggttgcttaaccaatgcctcaggagcacc |
200 |
Q |
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| T |
19781393 |
acggataatacaaactctcagtataatactaagaagttacaccactttttataaaaaaa-ttacttgttttggttgcttaaccaatgccccaggagcact |
19781491 |
T |
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| Q |
201 |
gtttaacattctcctactaagaatattaacaattgtcacttaaattttttacctgaaatcaatagtgacccatcatcactaagatggagactcgaaacag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19781492 |
gtttaacattctcctactaagaatattaacaattgttacttaaattttttacctgaaatcaatagtgacccatcatcactaagatggagactcgaaacag |
19781591 |
T |
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| Q |
301 |
gtttcgagtaaggagtgcatgttttgatgatatctccggaagggagtgacaaggagtggatactccccgacacgccacctgcaaagagaaagtcaccatc |
400 |
Q |
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| T |
19781592 |
gtttcgagtaaggagtgcatgttttgatgatatctccggaagggagtgacaaggagtggatactccccgacacgccacctgcaaagagaaagtcaccatc |
19781691 |
T |
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| Q |
401 |
caaggtggcggctagtggagccacaggttc |
430 |
Q |
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| T |
19781692 |
caaggtggcggctagtggagccacaggttc |
19781721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 161 - 216
Target Start/End: Complemental strand, 8435080 - 8435025
Alignment:
| Q |
161 |
ttacttgttttggttgcttaaccaatgcctcaggagcaccgtttaacattctccta |
216 |
Q |
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| T |
8435080 |
ttacttattttggatgcttaaccaatgcctcaggggcactggttaacattctccta |
8435025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 190
Target Start/End: Complemental strand, 6830291 - 6830262
Alignment:
| Q |
161 |
ttacttgttttggttgcttaaccaatgcct |
190 |
Q |
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| T |
6830291 |
ttacttgttttggttgcttaaccaatgcct |
6830262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 161 - 217
Target Start/End: Original strand, 7609630 - 7609685
Alignment:
| Q |
161 |
ttacttgttttggttgcttaaccaatgcctcaggagcaccgtttaacattctcctac |
217 |
Q |
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|||||| ||||||| |||||||||||||| | ||||||| | ||||||||||||||| |
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| T |
7609630 |
ttacttcttttggt-gcttaaccaatgccccgggagcactggttaacattctcctac |
7609685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0299 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0299
Description:
Target: scaffold0299; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 161 - 189
Target Start/End: Original strand, 18107 - 18135
Alignment:
| Q |
161 |
ttacttgttttggttgcttaaccaatgcc |
189 |
Q |
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| T |
18107 |
ttacttgttttggttgcttaaccaatgcc |
18135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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