View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16288_high_1 (Length: 476)
Name: NF16288_high_1
Description: NF16288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16288_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 1 - 456
Target Start/End: Complemental strand, 8683678 - 8683222
Alignment:
| Q |
1 |
atgaatcaatgaacatataagataacaaatcaaagatttacataaaaatcgaaacaaaagacgttacagatactaacctgacagcatttctccnnnnnnn |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
8683678 |
atgaatcaatgaacatataagataacaaatcaaagatttacataaaaatcgaaacaaaagaagttacagatactaacctgacagcatttctccaaaaacc |
8683579 |
T |
|
| Q |
101 |
nnnnnntccaatagccatttggaaacttgaacttatgatcaaagcaccttgaatccctctcattgtcatagtaaacctctaggaaattcaaacaaacatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8683578 |
aaaaaatccaatagccatttggaaacttgaacttatgatcaaagcaccttgaatccctctcattgtcatagtaaacctctaggaaattcaaacaaacatg |
8683479 |
T |
|
| Q |
201 |
tagacaaagtcagcaaaatgaaaacgctaaagagtgaaacattttccatttataacatgtacgaaaaaa-cagaagcataaaaaatagtttgatttacct |
299 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
8683478 |
tagacaaagtcagcaaaatgaaaacgctaaagagtgaaacattttccatttataacatgtacgaaaaaaacagaagcataaaaaatagtttgatttacct |
8683379 |
T |
|
| Q |
300 |
cataaggatctgtatatgcattatatctgctagcctgaacaatagaaattataggtattatgtaactgtatgaaccaacaattacaattggcaatcgagt |
399 |
Q |
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| T |
8683378 |
cataaggatctgtatatgcattatatctgctagcctgaacaatagaaattataggtattatgtaactgtatgaaccaacaattacaattggcaatcgagt |
8683279 |
T |
|
| Q |
400 |
tccgaacaaagattgaaaaaatgtgcttagtccagacacaaatagaagtgtctgtat |
456 |
Q |
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| T |
8683278 |
tccgaacaaagattgaaaaaatgtgcttagtccagacacaaatagaagtgtctgtat |
8683222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 6e-29; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 296 - 441
Target Start/End: Complemental strand, 47579685 - 47579540
Alignment:
| Q |
296 |
acctcataaggatctgtatatgcattatatctgctagcctgaacaatagaaattataggtattatgtaactgtatgaaccaacaattacaattggcaatc |
395 |
Q |
| |
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|||||||||||||||||||||| | | ||||||||||| |||||| || || || ||||| |||||| ||||||||||||||| |||| ||||||||| |
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| T |
47579685 |
acctcataaggatctgtatatgaactgtatctgctagcttgaacagctgacataattggtatcatgtaagtgtatgaaccaacaactacacttggcaatc |
47579586 |
T |
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| Q |
396 |
gagttccgaacaaagattgaaaaaatgtgcttagtccagacacaaa |
441 |
Q |
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| |||||||| |||||||||| ||| ||||| |||||||| ||||| |
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| T |
47579585 |
gggttccgaataaagattgaagaaacgtgctcagtccagaaacaaa |
47579540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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