View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16288_high_2 (Length: 384)
Name: NF16288_high_2
Description: NF16288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16288_high_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 283; Significance: 1e-158; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 16 - 379
Target Start/End: Complemental strand, 1429536 - 1429176
Alignment:
| Q |
16 |
aattttgtctatatcctaagaatcatcatgaaatccattcttagtagtttaccatcaaattcaaatatttgtatatttagcctactaattgttggattaa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1429536 |
aattttgtctatatcctaagaatcatcatgaaatccattcttagtagtttaccatcaaattcaaatatttgtatatttagcctactaattgttggattaa |
1429437 |
T |
|
| Q |
116 |
tagaaatttcgctttatgattctcttgtacattcactctctcttgtgtttggattcaaaaagaaaatttaaaaactgaagagagaagaatttagatactt |
215 |
Q |
| |
|
|| ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
1429436 |
tataaatttcactttatgattctcttgtacattcactctctc--gtgtttggattcaaaaagaaaatttaaaaactgaagagagaagaatttagatattt |
1429339 |
T |
|
| Q |
216 |
ttgtgtaaaattgaaatcacacnnnnnnnnnnaaagaaaaaatcatacacttgttattctaagttcatctttattccatttatatgagctccatttaaca |
315 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
1429338 |
ttgtgtaaaattgaaatcacacattttttttaaaagaaaaaatcatacacttgttattctgagttcatctttattccatttagatgagctccatttaaca |
1429239 |
T |
|
| Q |
316 |
tacaaatacaatgatcactactttgttcccttttacggtgcaccaataataaattccctttgct |
379 |
Q |
| |
|
|| |||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
1429238 |
tataaatacaatgatcactactttgtt-ccttttacggtgcaccaatattaagttccctttgct |
1429176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 15 - 144
Target Start/End: Complemental strand, 1453904 - 1453773
Alignment:
| Q |
15 |
caattttgtctatatcctaagaatcatcatgaa---atccattcttagtagtttaccatcaaattcaaatatttgtatatttagcctactaattgttgga |
111 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| || ||||||||||| | || |||||||||||||||||| |||||||| ||| ||||||||||| |
|
|
| T |
1453904 |
caattttg-ctatatcctaagaatcatcatgaagtaattcattcttagtaatataacatcaaattcaaatatttatatatttaagctattaattgttgga |
1453806 |
T |
|
| Q |
112 |
ttaatagaaatttcgctttatgattctcttgta |
144 |
Q |
| |
|
|||| |||||| | |||||||||||||||||| |
|
|
| T |
1453805 |
ttaagagaaatcccactttatgattctcttgta |
1453773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 51 - 138
Target Start/End: Complemental strand, 1460510 - 1460423
Alignment:
| Q |
51 |
cattcttagtagtttaccatcaaattcaaatatttgtatatttagcctactaattgttggattaatagaaatttcgctttatgattct |
138 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||||| |||||||| ||| ||||||||||||||| |||||| | |||||||||||| |
|
|
| T |
1460510 |
cattctcagtaatttaccatcaaattcaaatatttatatatttaagctattaattgttggattaagagaaatcttactttatgattct |
1460423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 51 - 138
Target Start/End: Original strand, 1556413 - 1556500
Alignment:
| Q |
51 |
cattcttagtagtttaccatcaaattcaaatatttgtatatttagcctactaattgttggattaatagaaatttcgctttatgattct |
138 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||||| |||||||| ||| ||||||||||||||| |||||| | |||||||||||| |
|
|
| T |
1556413 |
cattctcagtaatttaccatcaaattcaaatatttatatatttaagctattaattgttggattaagagaaatcttactttatgattct |
1556500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 101 - 232
Target Start/End: Original strand, 1567893 - 1568015
Alignment:
| Q |
101 |
taattgttggattaatagaaatttcgctttatgattctcttgtacattcactctctcttgtgtttggattcaaaaagaaaatttaaaaactgaagagaga |
200 |
Q |
| |
|
||||||||||||||| |||||| | |||||||||||||||| | |||||| |||||||||| ||||| |||||| ||||| | |||||| |
|
|
| T |
1567893 |
taattgttggattaagagaaatcccactttatgattctcttgaa---------tctcttttgtttggattgaaaaaaaaaattgaaaaatgtaggagaga |
1567983 |
T |
|
| Q |
201 |
agaatttagatacttttgtgtaaaattgaaat |
232 |
Q |
| |
|
|||||||||| ||||||||||||||| ||||| |
|
|
| T |
1567984 |
agaatttagagacttttgtgtaaaatggaaat |
1568015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 1749566 - 1749485
Alignment:
| Q |
16 |
aattttgtctatatcctaagaatcatcat---gaaatccattcttagtagtttaccatcaaattcaaatatttgtatattta |
94 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||| |||||| | || |||||||||| ||||||| |||| |||||||| |
|
|
| T |
1749566 |
aattttgtctatatcctaagaatcatcataaagtaattcattctcattaatttaccatcatattcaaacatttatatattta |
1749485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University