View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16288_low_4 (Length: 377)
Name: NF16288_low_4
Description: NF16288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16288_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 118 - 361
Target Start/End: Complemental strand, 1218017 - 1217774
Alignment:
| Q |
118 |
gtacatttgagagtgagagaggaaaaagagaggagattctgagtggtggaatttggcatgagaacaaaagaggaagtgctgtctttgtataccccacttg |
217 |
Q |
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| T |
1218017 |
gtacatttgagagtgagagaggaaaaagagaggagattctgagtggtggaatttggcatgagaacaaaagaggaagtgctgtctttgtataccccacttg |
1217918 |
T |
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| Q |
218 |
tgcatgaggaattattggggtttcacgtgcacatattgagaaaagaaaaacaagatgtcttgtgtttggattttggtgtaagtgggttttagagactttg |
317 |
Q |
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| T |
1217917 |
tgcatgaggaattattggggtttcacgtgcacatattgagaaaagaaaaacaagatgtcttgtgtttggattttggtgtaagtgggttttagagactttg |
1217818 |
T |
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| Q |
318 |
gatttttacatcatcttattggcctttcttaatccctcttagat |
361 |
Q |
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| T |
1217817 |
gatttttacatcatcttattggcctttcttaagccctcttagat |
1217774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 11 - 64
Target Start/End: Complemental strand, 1218124 - 1218071
Alignment:
| Q |
11 |
caaaggaaagaaaaaatggcaacatagtagctatgttgaaagccatgaatttgt |
64 |
Q |
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| T |
1218124 |
caaaggaaagaaaaaatggcaacatagtagctatgttgaaagccatgaatttgt |
1218071 |
T |
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