View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16288_low_5 (Length: 275)

Name: NF16288_low_5
Description: NF16288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16288_low_5
NF16288_low_5
[»] scaffold0091 (3 HSPs)
scaffold0091 (13-127)||(29057-29172)
scaffold0091 (190-267)||(28917-28994)
scaffold0091 (205-267)||(24720-24782)
[»] scaffold0218 (2 HSPs)
scaffold0218 (13-126)||(14378-14492)
scaffold0218 (190-267)||(14237-14314)
[»] chr3 (9 HSPs)
chr3 (13-124)||(16642300-16642412)
chr3 (13-125)||(4712800-4712913)
chr3 (13-127)||(14062778-14062893)
chr3 (13-127)||(14055037-14055152)
chr3 (23-123)||(13926858-13926960)
chr3 (203-267)||(16642133-16642197)
chr3 (203-267)||(4712995-4713059)
chr3 (203-267)||(14062981-14063045)
chr3 (204-267)||(14055221-14055284)
[»] chr6 (4 HSPs)
chr6 (13-127)||(14989375-14989490)
chr6 (13-125)||(14980263-14980376)
chr6 (203-267)||(14980458-14980522)
chr6 (90-127)||(10906902-10906939)
[»] chr1 (5 HSPs)
chr1 (13-127)||(51658662-51658777)
chr1 (20-127)||(13882243-13882351)
chr1 (203-267)||(13882462-13882526)
chr1 (206-264)||(51658854-51658912)
chr1 (19-112)||(1567069-1567166)
[»] chr7 (9 HSPs)
chr7 (13-127)||(48376787-48376902)
chr7 (13-127)||(16060512-16060627)
chr7 (190-267)||(16060374-16060449)
chr7 (23-127)||(4531759-4531865)
chr7 (204-267)||(9080206-9080269)
chr7 (215-267)||(16069015-16069067)
chr7 (215-267)||(48376637-48376689)
chr7 (90-127)||(9080338-9080375)
chr7 (95-127)||(37946032-37946064)
[»] chr8 (6 HSPs)
chr8 (13-127)||(23658526-23658649)
chr8 (13-127)||(23657751-23657884)
chr8 (216-267)||(23657648-23657699)
chr8 (216-267)||(23658423-23658474)
chr8 (215-267)||(17862251-17862303)
chr8 (23-58)||(29293929-29293964)
[»] scaffold1269 (1 HSPs)
scaffold1269 (13-104)||(1-93)
[»] scaffold0003 (2 HSPs)
scaffold0003 (53-127)||(130795-130870)
scaffold0003 (203-267)||(130633-130697)
[»] scaffold0319 (1 HSPs)
scaffold0319 (13-81)||(13570-13638)
[»] scaffold0063 (2 HSPs)
scaffold0063 (190-267)||(28443-28518)
scaffold0063 (89-127)||(28342-28380)
[»] chr2 (2 HSPs)
chr2 (23-127)||(23656470-23656576)
chr2 (215-266)||(23907788-23907839)
[»] scaffold0061 (1 HSPs)
scaffold0061 (203-262)||(18097-18156)
[»] scaffold1043 (1 HSPs)
scaffold1043 (215-267)||(1432-1484)
[»] chr5 (3 HSPs)
chr5 (215-267)||(25756788-25756840)
chr5 (215-267)||(25790961-25791013)
chr5 (220-264)||(24832209-24832253)
[»] chr4 (2 HSPs)
chr4 (37-106)||(3576240-3576311)
chr4 (220-267)||(19728457-19728504)


Alignment Details
Target: scaffold0091 (Bit Score: 100; Significance: 2e-49; HSPs: 3)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 13 - 127
Target Start/End: Complemental strand, 29172 - 29057
Alignment:
Q  13 gagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataatgtttata 111  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  29172 gagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttata 29073  T
Q  112 tgttagtgatgatgag 127  Q
    ||||||||||||||||    
T  29072 tgttagtgatgatgag 29057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 190 - 267
Target Start/End: Complemental strand, 28994 - 28917
Alignment:
Q  190 gggtggtgtgtaaatatatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 267  Q
    |||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  28994 gggtggtgtgtaaatatatatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtc 28917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 205 - 267
Target Start/End: Complemental strand, 24782 - 24720
Alignment:
Q  205 atatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 267  Q
    ||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  24782 atatatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtc 24720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0218 (Bit Score: 99; Significance: 6e-49; HSPs: 2)
Name: scaffold0218
Description:

Target: scaffold0218; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 13 - 126
Target Start/End: Complemental strand, 14492 - 14378
Alignment:
Q  13 gagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataatgtttata 111  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  14492 gagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttata 14393  T
Q  112 tgttagtgatgatga 126  Q
    |||||||||||||||    
T  14392 tgttagtgatgatga 14378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0218; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 190 - 267
Target Start/End: Complemental strand, 14314 - 14237
Alignment:
Q  190 gggtggtgtgtaaatatatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 267  Q
    |||||||||||  ||||||| ||| ||||||||| ||||| ||||||||||||||||||||||||  |||||| ||||    
T  14314 gggtggtgtgtgtatatatatatattgactatgacaatgatgacgtataattatgatgatgacttatatgatggtgtc 14237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 97; Significance: 1e-47; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 13 - 124
Target Start/End: Complemental strand, 16642412 - 16642300
Alignment:
Q  13 gagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataatgtttata 111  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  16642412 gagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttata 16642313  T
Q  112 tgttagtgatgat 124  Q
    |||||||||||||    
T  16642312 tgttagtgatgat 16642300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 13 - 125
Target Start/End: Original strand, 4712800 - 4712913
Alignment:
Q  13 gagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataatgtttata 111  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||    
T  4712800 gagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagataatatatatatgtaattaaataaatacgatgagaaatgataatgtttata 4712899  T
Q  112 tgttagtgatgatg 125  Q
    ||||||||||||||    
T  4712900 tgttagtgatgatg 4712913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 13 - 127
Target Start/End: Original strand, 14062778 - 14062893
Alignment:
Q  13 gagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataatgtttata 111  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||    
T  14062778 gagatgaataatgaggattccataatgtgacgaagagtgatgacgaagatattatacatatgtaattaaataaatacgatgagaaatgataatgtttata 14062877  T
Q  112 tgttagtgatgatgag 127  Q
    ||||||| ||||||||    
T  14062878 tgttagttatgatgag 14062893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 13 - 127
Target Start/End: Original strand, 14055037 - 14055152
Alignment:
Q  13 gagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataatgtttata 111  Q
    ||||||||||||||||| |  |||||| |||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||    
T  14055037 gagatgaataatgaggattctataatgcgacgaagagtgatgacgaagatattatacatatgtaattaaataaatacgatgagaaatgataatgtttata 14055136  T
Q  112 tgttagtgatgatgag 127  Q
    |||||||||| |||||    
T  14055137 tgttagtgataatgag 14055152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 23 - 123
Target Start/End: Original strand, 13926858 - 13926960
Alignment:
Q  23 atgaggaatacataatgtgacgaagagtgatgacgaa-gatattatatacatgtaattaa-taaatacgatgagaaatgataatgtttatatgttagtga 120  Q
    ||||||||| |||||||||| ||||||||||||| |  ||||||||||| || ||| ||| ||||||||||||||||||||||||||||||| |||||||    
T  13926858 atgaggaatccataatgtgatgaagagtgatgacaattgatattatatatatttaaataaataaatacgatgagaaatgataatgtttatattttagtga 13926957  T
Q  121 tga 123  Q
    |||    
T  13926958 tga 13926960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 203 - 267
Target Start/End: Complemental strand, 16642197 - 16642133
Alignment:
Q  203 atatatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 267  Q
    ||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  16642197 atatatatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtc 16642133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 203 - 267
Target Start/End: Original strand, 4712995 - 4713059
Alignment:
Q  203 atatatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 267  Q
    ||||||| ||| ||||||||||||||| ||||||||||||||||||| |||||||||||| ||||    
T  4712995 atatatatatattgactatgagaatgacgacgtataattatgatgataacttgaatgatggtgtc 4713059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 203 - 267
Target Start/End: Original strand, 14062981 - 14063045
Alignment:
Q  203 atatatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 267  Q
    ||||||| ||| |||| |||||||||| |||||||||||||||||||||||||||||||| ||||    
T  14062981 atatatatatattgacgatgagaatgatgacgtataattatgatgatgacttgaatgatggtgtc 14063045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 204 - 267
Target Start/End: Original strand, 14055221 - 14055284
Alignment:
Q  204 tatatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 267  Q
    |||||| ||| |||| |||| ||||| |||||||||||||||||||||||||||||||||||||    
T  14055221 tatatatatattgacgatgataatgatgacgtataattatgatgatgacttgaatgatgatgtc 14055284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 96; Significance: 4e-47; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 13 - 127
Target Start/End: Original strand, 14989375 - 14989490
Alignment:
Q  13 gagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataatgtttata 111  Q
    |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  14989375 gagatgaataatgacgaatccataatgtgacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttata 14989474  T
Q  112 tgttagtgatgatgag 127  Q
    ||||||||||||||||    
T  14989475 tgttagtgatgatgag 14989490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 13 - 125
Target Start/End: Original strand, 14980263 - 14980376
Alignment:
Q  13 gagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataatgtttata 111  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||    
T  14980263 gagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagataatatatatatgtaattaaataaatacgatgagaaatgataatgtttata 14980362  T
Q  112 tgttagtgatgatg 125  Q
    ||||||||||||||    
T  14980363 tgttagtgatgatg 14980376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 203 - 267
Target Start/End: Original strand, 14980458 - 14980522
Alignment:
Q  203 atatatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 267  Q
    ||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  14980458 atatatatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtc 14980522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 90 - 127
Target Start/End: Original strand, 10906902 - 10906939
Alignment:
Q  90 atgagaaatgataatgtttatatgttagtgatgatgag 127  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  10906902 atgagaaatgataatgtttatattttagtgatgatgag 10906939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 96; Significance: 4e-47; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 13 - 127
Target Start/End: Original strand, 51658662 - 51658777
Alignment:
Q  13 gagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataatgtttata 111  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||    
T  51658662 gagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatatttata 51658761  T
Q  112 tgttagtgatgatgag 127  Q
    ||||||||||||||||    
T  51658762 tgttagtgatgatgag 51658777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 20 - 127
Target Start/End: Original strand, 13882243 - 13882351
Alignment:
Q  20 ataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataatgtttatatgttagt 118  Q
    |||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||    
T  13882243 ataatgaggaatccatattgtgacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttatatgttagt 13882342  T
Q  119 gatgatgag 127  Q
    |||||||||    
T  13882343 gatgatgag 13882351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 203 - 267
Target Start/End: Original strand, 13882462 - 13882526
Alignment:
Q  203 atatatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 267  Q
    ||||||| |||  ||| |||||||||| |||||||||||||||||||||||||||||||| ||||    
T  13882462 atatatatatatagacaatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtc 13882526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 206 - 264
Target Start/End: Original strand, 51658854 - 51658912
Alignment:
Q  206 tatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatgat 264  Q
    |||| ||| |||| |||||||||| ||||||||||||||||||||||||||| ||||||    
T  51658854 tatatatattgacgatgagaatgatgacgtataattatgatgatgacttgaacgatgat 51658912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 112
Target Start/End: Original strand, 1567069 - 1567166
Alignment:
Q  19 aataatgaggaat-acataat-gtgacgaagagtgatgacgaa-gatattatatacatgtaattaa-taaatacgatgagaaatgataatgtttatat 112  Q
    ||||||||||||| | ||||| ||||| ||||||||||||||  ||||||||||| ||||||  || ||||||||||||||||||| ||| |||||||    
T  1567069 aataatgaggaatcatataattgtgacaaagagtgatgacgattgatattatatatatgtaaacaaataaatacgatgagaaatgacaatatttatat 1567166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 92; Significance: 9e-45; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 13 - 127
Target Start/End: Complemental strand, 48376902 - 48376787
Alignment:
Q  13 gagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataatgtttata 111  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  48376902 gagatgaataatgaggaatctataatgtgacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttata 48376803  T
Q  112 tgttagtgatgatgag 127  Q
    ||||| ||||||||||    
T  48376802 tgttattgatgatgag 48376787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 13 - 127
Target Start/End: Complemental strand, 16060627 - 16060512
Alignment:
Q  13 gagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataatgtttata 111  Q
    |||||||||||||||||||  ||||||||| || |||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||    
T  16060627 gagatgaataatgaggaatctataatgtgatgaggagtgatgacgaagatattatatatatgtaattaaataaatatgatgagaaatgataatgtttata 16060528  T
Q  112 tgttagtgatgatgag 127  Q
    ||||||||||||||||    
T  16060527 tgttagtgatgatgag 16060512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 190 - 267
Target Start/End: Complemental strand, 16060449 - 16060374
Alignment:
Q  190 gggtggtgtgtaaatatatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 267  Q
    |||||||||||||||||||| ||  ||||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  16060449 gggtggtgtgtaaatatatatat--tgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtc 16060374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 23 - 127
Target Start/End: Original strand, 4531759 - 4531865
Alignment:
Q  23 atgaggaatacataatgtgacgaagagtgatgacga-agatattatatacatgt-aattaataaatacgatgagaaatgataatgtttatatgttagtga 120  Q
    ||||||||| |||||||||||||||||||||||| |  ||||||||||| |||| ||| ||||||||| ||||||||| |||||| |||||| ||| |||    
T  4531759 atgaggaatccataatgtgacgaagagtgatgacaattgatattatatatatgtaaataaataaatacaatgagaaataataatgcttatattttattga 4531858  T
Q  121 tgatgag 127  Q
    |||||||    
T  4531859 tgatgag 4531865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 204 - 267
Target Start/End: Complemental strand, 9080269 - 9080206
Alignment:
Q  204 tatatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 267  Q
    |||||| ||| |||| |||||||||| |||||||||||||||||||||||||||||||| ||||    
T  9080269 tatatatatattgacgatgagaatgatgacgtataattatgatgatgacttgaatgatggtgtc 9080206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 215 - 267
Target Start/End: Original strand, 16069015 - 16069067
Alignment:
Q  215 tgactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 267  Q
    |||| |||||||||| ||||||||||||||||||||| |||||||||||||||    
T  16069015 tgacgatgagaatgatgacgtataattatgatgatgatttgaatgatgatgtc 16069067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 215 - 267
Target Start/End: Complemental strand, 48376689 - 48376637
Alignment:
Q  215 tgactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 267  Q
    ||||||||||||||| |||||||||||||||||||||||| ||||||| ||||    
T  48376689 tgactatgagaatgatgacgtataattatgatgatgacttaaatgatggtgtc 48376637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 90 - 127
Target Start/End: Complemental strand, 9080375 - 9080338
Alignment:
Q  90 atgagaaatgataatgtttatatgttagtgatgatgag 127  Q
    ||||||||||||||||||||||||||||||||||||||    
T  9080375 atgagaaatgataatgtttatatgttagtgatgatgag 9080338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 127
Target Start/End: Original strand, 37946032 - 37946064
Alignment:
Q  95 aaatgataatgtttatatgttagtgatgatgag 127  Q
    |||||||||||||||||| ||||||||||||||    
T  37946032 aaatgataatgtttatattttagtgatgatgag 37946064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 13 - 127
Target Start/End: Complemental strand, 23658649 - 23658526
Alignment:
Q  13 gagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatataca--------tgtaatt-aataaatacgatgagaaatgataa 103  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |        ||||||| ||||||||||||||||||| ||||    
T  23658649 gagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagatattatatatatatgtgtgtgtaattaaataaatacgatgagaaattataa 23658550  T
Q  104 tgtttatatgttagtgatgatgag 127  Q
    ||||||||||||||||||||||||    
T  23658549 tgtttatatgttagtgatgatgag 23658526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 13 - 127
Target Start/End: Complemental strand, 23657884 - 23657751
Alignment:
Q  13 gagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatatta------------------tatacatgtaatt-aataaatacgatga 93  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||                  |||| |||||||| ||||||||||||||    
T  23657884 gagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagatattatatatatatatatatatatatatatgtaattaaataaatacgatga 23657785  T
Q  94 gaaatgataatgtttatatgttagtgatgatgag 127  Q
    ||||| ||||||||||||||||||||||||||||    
T  23657784 gaaattataatgtttatatgttagtgatgatgag 23657751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 216 - 267
Target Start/End: Complemental strand, 23657699 - 23657648
Alignment:
Q  216 gactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 267  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  23657699 gactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtc 23657648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 216 - 267
Target Start/End: Complemental strand, 23658474 - 23658423
Alignment:
Q  216 gactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 267  Q
    |||||||||||||| ||| |||||||||||||||||||||||||||| ||||    
T  23658474 gactatgagaatgacgacttataattatgatgatgacttgaatgatggtgtc 23658423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 267
Target Start/End: Original strand, 17862251 - 17862303
Alignment:
Q  215 tgactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 267  Q
    |||| ||||||||||  | |||||||||||||||||| |||||||||||||||    
T  17862251 tgacgatgagaatgataaggtataattatgatgatgatttgaatgatgatgtc 17862303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 23 - 58
Target Start/End: Complemental strand, 29293964 - 29293929
Alignment:
Q  23 atgaggaatacataatgtgacgaagagtgatgacga 58  Q
    ||||||||| ||||||||||||||||||||||||||    
T  29293964 atgaggaatccataatgtgacgaagagtgatgacga 29293929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1269 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: scaffold1269
Description:

Target: scaffold1269; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 13 - 104
Target Start/End: Complemental strand, 93 - 1
Alignment:
Q  13 gagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataat 104  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||    
T  93 gagatgaataatgaggattccataatgtgacgaagagtgatgacgaagatattatacatatgtaattaaataaatacgatgagaaatgataat 1  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 53 - 127
Target Start/End: Complemental strand, 130870 - 130795
Alignment:
Q  53 tgacgaagatattatatacatgtaattaa-taaatacgatgagaaatgataatgtttatatgttagtgatgatgag 127  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  130870 tgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttatatgttagtgatgatgag 130795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 203 - 267
Target Start/End: Complemental strand, 130697 - 130633
Alignment:
Q  203 atatatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 267  Q
    ||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  130697 atatatatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtc 130633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0319 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0319
Description:

Target: scaffold0319; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 13 - 81
Target Start/End: Original strand, 13570 - 13638
Alignment:
Q  13 gagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaattaa 81  Q
    ||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||| ||||||||||    
T  13570 gagatgaataatgaggaatccatgatgtgacaaagagtgatgacgaagatattatatatatgtaattaa 13638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 190 - 267
Target Start/End: Original strand, 28443 - 28518
Alignment:
Q  190 gggtggtgtgtaaatatatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 267  Q
    |||||||||||||||||||| ||  ||||||||||||||| ||||||||||||||||||||| |||||||||| ||||    
T  28443 gggtggtgtgtaaatatatatat--tgactatgagaatgacgacgtataattatgatgatgaattgaatgatggtgtc 28518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 89 - 127
Target Start/End: Original strand, 28342 - 28380
Alignment:
Q  89 gatgagaaatgataatgtttatatgttagtgatgatgag 127  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  28342 gatgagaaatgatgatgtttatatgttagtgatgatgag 28380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 23 - 127
Target Start/End: Original strand, 23656470 - 23656576
Alignment:
Q  23 atgaggaatacataatgtgacgaagagtgatgacga-agatattatatacatgtaa-ttaataaatacgatgagaaatgataatgtttatatgttagtga 120  Q
    ||||||||| ||||||||||||||||||||||||||  ||||||||||| ||| || | ||||||||| ||||||||||||||| ||||||| ||| |||    
T  23656470 atgaggaatccataatgtgacgaagagtgatgacgattgatattatatatatgaaagtaaataaatacaatgagaaatgataatatttatattttaatga 23656569  T
Q  121 tgatgag 127  Q
    | |||||    
T  23656570 taatgag 23656576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 266
Target Start/End: Complemental strand, 23907839 - 23907788
Alignment:
Q  215 tgactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgt 266  Q
    |||| |||||||||| |||||||| |||||||||| | ||||||||||||||    
T  23907839 tgacgatgagaatgatgacgtatatttatgatgataatttgaatgatgatgt 23907788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 203 - 262
Target Start/End: Original strand, 18097 - 18156
Alignment:
Q  203 atatatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatg 262  Q
    ||||||| ||| ||||||||||||||| || |||| ||||||||||||||||||||||||    
T  18097 atatatatatattgactatgagaatgacgaagtatgattatgatgatgacttgaatgatg 18156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1043 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold1043
Description:

Target: scaffold1043; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 215 - 267
Target Start/End: Original strand, 1432 - 1484
Alignment:
Q  215 tgactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 267  Q
    |||| ||||||||||  |||||||||||||||||||| |||||||||||||||    
T  1432 tgacgatgagaatgataacgtataattatgatgatgatttgaatgatgatgtc 1484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 215 - 267
Target Start/End: Original strand, 25756788 - 25756840
Alignment:
Q  215 tgactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 267  Q
    |||| |||||||||| ||| ||||||||||||||||| |||||||||||||||    
T  25756788 tgacgatgagaatgatgacttataattatgatgatgatttgaatgatgatgtc 25756840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 215 - 267
Target Start/End: Complemental strand, 25791013 - 25790961
Alignment:
Q  215 tgactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 267  Q
    |||| |||||||||| ||| ||||||||||||||||| |||||||||||||||    
T  25791013 tgacgatgagaatgatgacttataattatgatgatgatttgaatgatgatgtc 25790961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 264
Target Start/End: Original strand, 24832209 - 24832253
Alignment:
Q  220 atgagaatgaagacgtataattatgatgatgacttgaatgatgat 264  Q
    |||||||||| || |||||||||||||||||| ||||||||||||    
T  24832209 atgagaatgatgatgtataattatgatgatgatttgaatgatgat 24832253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 106
Target Start/End: Original strand, 3576240 - 3576311
Alignment:
Q  37 atgtgacgaagagtgatgacga-agatattatatacatgta-attaataaatacgatgagaaatgataatgt 106  Q
    ||||||||||||||||||||||  ||| ||||||| ||||| || |||||||||||||||| ||||| ||||    
T  3576240 atgtgacgaagagtgatgacgattgattttatataaatgtatataaataaatacgatgagagatgatgatgt 3576311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 220 - 267
Target Start/End: Original strand, 19728457 - 19728504
Alignment:
Q  220 atgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 267  Q
    ||||||||||  | |||||||||||||||||| |||||||||||||||    
T  19728457 atgagaatgataaagtataattatgatgatgatttgaatgatgatgtc 19728504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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