View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16288_low_7 (Length: 265)
Name: NF16288_low_7
Description: NF16288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16288_low_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 33767816 - 33767566
Alignment:
| Q |
1 |
ttgccacatccggttaattttgtcatctggaaaactaagttcgcatacagaaatcacaatcattagaattcacatcgtgcctatttaattccacatttct |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33767816 |
ttgccacatccggttaaatttgtcatctggaaaactaagttcgcatacagaaatcacaatcattagaattcacatcgtgcctatttaattccacatttct |
33767717 |
T |
|
| Q |
101 |
acgatttgaatacacacacgcacatagcctttaagtgagtcagcaaaatacgcaatgtgctaatgtttttagggtaatgcttaagatagcgaatattttc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33767716 |
acgatttgaatacacacacgcacatagcctttaagtgagtcagcaaaatacacaatgtgctaatgtttttagggtaatgcttaagatagcgaatattttc |
33767617 |
T |
|
| Q |
201 |
tccacgacacgttcacgatgtatgttttaactatgctgaccaagcttatac |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33767616 |
tccacgacacgttcacgatgtatgttttaactatgctgaccaagcttatac |
33767566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University