View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16289_high_1 (Length: 293)
Name: NF16289_high_1
Description: NF16289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16289_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 268; Significance: 1e-150; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-150
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 23134929 - 23134642
Alignment:
| Q |
1 |
cagtctttgacttctcccaagttacccctttagtgttgtcgcccccacacagccacaataccactcctgaaccgcacgtgccaaaaacaacccaacagtt |
100 |
Q |
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|||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
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| T |
23134929 |
cagtctttgacttctcccaagtcaaccctttagtgttgtcgcccccacacagccacaagaccacacctgaaccgcacgtgccaaaaacaacccaacagtt |
23134830 |
T |
|
| Q |
101 |
accaactaaacaaactaccacaaatgaagttcaagaaaatgatcccaccttagtcaataatccaacacctgaacccgaccctaattcaagtttcatgctc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23134829 |
accaactaaacaaactaccacaaatgaagttcaagaaaatgatcccaccttagtcaataatccaacacctgaacccgaccctaattcaagtttcatgctc |
23134730 |
T |
|
| Q |
201 |
gccacccccattccaaatgaccaagaagctaaccaccccacaaaagaccaaattggtgaaactagctatcataaggatgatgtccatc |
288 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
23134729 |
gccacccccattccaaatgaccaagaagctaaccaccccacaaaagaccaaattggtgaaactagctatcataaggatgatgttcatc |
23134642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 268; Significance: 1e-150; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-150
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 20282652 - 20282939
Alignment:
| Q |
1 |
cagtctttgacttctcccaagttacccctttagtgttgtcgcccccacacagccacaataccactcctgaaccgcacgtgccaaaaacaacccaacagtt |
100 |
Q |
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|
|||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
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| T |
20282652 |
cagtctttgacttctcccaagtcaaccctttagtgttgtcgcccccacacagccacaagaccacacctgaaccgcacgtgccaaaaacaacccaacagtt |
20282751 |
T |
|
| Q |
101 |
accaactaaacaaactaccacaaatgaagttcaagaaaatgatcccaccttagtcaataatccaacacctgaacccgaccctaattcaagtttcatgctc |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20282752 |
accaactaaacaaactaccacaaatgaagttcaagaaaatgatcccaccttagtcaataatccaacacctgaacccgaccctaattcaagtttcatgctc |
20282851 |
T |
|
| Q |
201 |
gccacccccattccaaatgaccaagaagctaaccaccccacaaaagaccaaattggtgaaactagctatcataaggatgatgtccatc |
288 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
20282852 |
gccacccccattccaaatgaccaagaagctaaccaccccacaaaagaccaaattggtgaaactagctatcataaggatgatgttcatc |
20282939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 11894951 - 11895238
Alignment:
| Q |
1 |
cagtctttgacttctcccaagttacccctttagtgttgtcgcccccacacagccacaataccactcctgaaccgcacgtgccaaaaacaacccaacagtt |
100 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
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| T |
11894951 |
cagtctttgacttctcccaagtcaaccctttagtgttgtcgcccccacacagccacaagaccacacctgaaccgcacgtgccaaaaacaacccaacagtt |
11895050 |
T |
|
| Q |
101 |
accaactaaacaaactaccacaaatgaagttcaagaaaatgatcccaccttagtcaataatccaacacctgaacccgaccctaattcaagtttcatgctc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
11895051 |
accaactaaacaaactaccacaaatgaagttcaagaaaatgatcccaccttagtcaataatccaacacctgaacccgacccgaattcaagtttcatgctc |
11895150 |
T |
|
| Q |
201 |
gccacccccattccaaatgaccaagaagctaaccaccccacaaaagaccaaattggtgaaactagctatcataaggatgatgtccatc |
288 |
Q |
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|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
11895151 |
gccacccccattctaaatgaccaagaagctaaccaccccacaaaagaccaaattggtgaaactagctatcataaggatgatgttcatc |
11895238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 6 - 172
Target Start/End: Complemental strand, 14656025 - 14655859
Alignment:
| Q |
6 |
tttgacttctcccaagttacccctttagtgttgtcgcccccacacagccacaataccactcctgaaccgcacgtgccaaaaacaacccaacagttaccaa |
105 |
Q |
| |
|
|||||||||||||| || | ||||||| ||||||||||||||| || || ||| |||||||||||||||||||||| |||||||| ||||| ||||||| |
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| T |
14656025 |
tttgacttctcccatgtcaaccctttaatgttgtcgcccccactcaaccgcaaggccactcctgaaccgcacgtgcctaaaacaactcaacaattaccaa |
14655926 |
T |
|
| Q |
106 |
ctaaacaaactaccacaaatgaagttcaagaaaatgatcccaccttagtcaataatccaacacctga |
172 |
Q |
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||||||||||||||| ||||||| |||| |||||| ||||| | ||||||||| ||||||||| |
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| T |
14655925 |
ataaacaaactaccactaatgaagctcaaaaaaatgttcccattgttatcaataatcaaacacctga |
14655859 |
T |
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