View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1629-INSERTION-1 (Length: 642)
Name: NF1629-INSERTION-1
Description: NF1629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1629-INSERTION-1 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 603; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 603; E-Value: 0
Query Start/End: Original strand, 8 - 642
Target Start/End: Original strand, 3093109 - 3093743
Alignment:
| Q |
8 |
tgatgttgagtggaattggagcagcacatcaccttaagcaacataacatcagtgtagtgttacatcaaccatttgtaggacaaggaatgtcagataaccc |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3093109 |
tgatgttgagtggaattggagcagcacatcaccttaagcaacataacatcagtgtagtgttacatcaaccatttgtaggacaaggaatgtcagataaccc |
3093208 |
T |
|
| Q |
108 |
aatgaactctgtttatgtcccatctccttctccggtagaggtttccctcatttctgttgttggcattaccagctttggcagctatattgaagccgctagc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3093209 |
aatgaactctgtttatgtcccatctccttctccggtagaggtttccctcatttctgttgttggcattaccagctttggcagctatattgaagccgctagc |
3093308 |
T |
|
| Q |
208 |
ggcgcaacattcaccggttctcaaagagacttcggaatgttttctcccgaggtacattttaaaatttgtgttcgatttaaatcaattcttacaaactagt |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
3093309 |
ggcgcaacattcaccggttctcaaagagacttcggaatgttttctcccgaggtacattttaaaatttgtgttcgatctaaatcaattcttacaaactagt |
3093408 |
T |
|
| Q |
308 |
gtgatatgtctttgacctatgacttactttttaaagacatgttacatctaatctaatgtgatactttcgaaaccacatggaatttcatctggttaagttt |
407 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
3093409 |
gcgatatgtctttgacctatgacttactttttaaagacatgttacatctaatctaatgtgagactttcaaaaccacatggaatttcatccggttaagttt |
3093508 |
T |
|
| Q |
408 |
catccacgtcaatttattatttagaagttaacatcaaaaccaaataaacaatatggtatggcatggcatgacctagctaacaaatagcaaatattacaaa |
507 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3093509 |
catccacgtcaatttattatttagaagttaacatcaaaaccaaataaacaatatggtatggtatggcatgacctagctaacaaatagcaaatattacaaa |
3093608 |
T |
|
| Q |
508 |
aatatttttcaaacccgactcccctgcaattaaggaatccatgcattcatgcagtcggacggtagtcgtttgatcaaaactgaacaagtcatattcaatc |
607 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
3093609 |
aatatttttcaaacccgactcccctgcaattaaggaatccatgcattcatgcagtcggacggtagtcgtttgatcaaaattgaacaagtcatattcaatc |
3093708 |
T |
|
| Q |
608 |
gcgatattttctattggtaaaataaaaatctgtat |
642 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |
|
|
| T |
3093709 |
gcgatattttctatcggtaaaataaaaatctgtat |
3093743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 8 - 354
Target Start/End: Original strand, 3084229 - 3084574
Alignment:
| Q |
8 |
tgatgttgagtggaattggagcagcacatcaccttaagcaacataacatcagtgtagtgttacatcaaccatttgtaggacaaggaatgtcagataaccc |
107 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| | |||| |||||||||||||||||| ||||||| || ||||||||||||||||||||||| || |
|
|
| T |
3084229 |
tgatgttgagtggaattggagcaggacatcaccttagggaacacaacatcagtgtagtgttagatcaacctttggtaggacaaggaatgtcagataatcc |
3084328 |
T |
|
| Q |
108 |
aatgaactctgtttatgtcccatctccttctccggtagaggtttccctcatttctgttgttggcattaccagctttggcagctatattgaagccgctagc |
207 |
Q |
| |
|
||||||| ||||||||||||| |||||||| || |||||||| ||||||||||| |||||||||||||||| ||| |||||||| |||||||||| ||| |
|
|
| T |
3084329 |
aatgaacgctgtttatgtcccgtctccttcccccgtagaggtctccctcatttcagttgttggcattaccaacttcggcagctacattgaagccgtgagc |
3084428 |
T |
|
| Q |
208 |
ggcgcaacattcaccggttctcaaagagacttcggaatgttttctcccgaggtacattttaaaatttgtgttcgatttaaatcaattcttacaaactagt |
307 |
Q |
| |
|
|| ||| | |||||| || | ||| || ||| ||||||| ||||| |||||||||| | ||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
3084429 |
ggtgcagccttcaccagtaatggaagcgagttcacaatgtttactcccaaggtacatttaacaatttgtgttccatctaaatcaattcttacaaactagt |
3084528 |
T |
|
| Q |
308 |
gtgatatgtctttgacctatgacttactttttaaagacatgttacat |
354 |
Q |
| |
|
| |||||||||| ||| ||| | |||||||| |||||||| ||||| |
|
|
| T |
3084529 |
gcgatatgtcttcgacttatta-atactttttcaagacatggtacat |
3084574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University