View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1629-INSERTION-4 (Length: 717)
Name: NF1629-INSERTION-4
Description: NF1629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1629-INSERTION-4 |
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| [»] chr5 (7 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 403; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 202 - 717
Target Start/End: Original strand, 17379766 - 17380284
Alignment:
| Q |
202 |
ctaaacaaaattaattattccataaaaaattatcagcagactaatatagccaaaaaacaatcaataacgcaagttaacattgtcttctaaggtggagaca |
301 |
Q |
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| T |
17379766 |
ctaaacaaaattaattattccataaaaaattatcatcagactaatataaccaaaaaacaatcaataacgcaagttaacattgtcttctaaggtatagaga |
17379865 |
T |
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| Q |
302 |
gattaatagtccggtcaggccaaatgctcaaaaccaaaccacataggaaaattaatatttcacacaggttaaaa-tgctgcagattgtcccaaacttcaa |
400 |
Q |
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| T |
17379866 |
gattaatagtctgatcaagccaaatgctcaaaatcaaaccacataggaaaattaatatttcacacaggttaaaaatgctacagattggcccaaacttcaa |
17379965 |
T |
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| Q |
401 |
actcttaactttataaagattagtttgacacatcaatgggtagtttatactgnnnnnnnactc--tcttatcttctgagtatttttacaaatcctatttt |
498 |
Q |
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| T |
17379966 |
actcttaactttataaagatttgtttgacacatcaatgggtagtttatgctgtttttttactcgatcttatcttctgagtatttttacaaatcctacttt |
17380065 |
T |
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| Q |
499 |
gtctttgatcgacaagaaaagaactcaacaacatagagcattgggaatatccttatcatgttctagattgtgtttcatctcatctaacagcatttaaaat |
598 |
Q |
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| T |
17380066 |
gtctttgatcgacaagaaaagaactcaacaacttagagcattgggaatatccatatcatgttctagattgtgtttcatctcatctaacatcatttaaaat |
17380165 |
T |
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| Q |
599 |
atagactatgaaccattggaagctgattttcaaatcaagacatatattttgcagaatgtgattgtgacttttacagattatgaccatttgtcattctctc |
698 |
Q |
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| T |
17380166 |
atagactatgaaccattggaagctgattttcgaatcacgacatatattttgcagaatgtgattgtgacttttacagattatgaccatttgtcattctctc |
17380265 |
T |
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| Q |
699 |
gtcacccaaatccaatgaa |
717 |
Q |
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| T |
17380266 |
gtcacccaaatccaatgaa |
17380284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 517 - 715
Target Start/End: Original strand, 17392578 - 17392772
Alignment:
| Q |
517 |
aagaactcaacaac-atagagcattgggaatatccttatcatgttctagattgtgtttcatctcatctaacagcattt-aaaatatagactatgaaccat |
614 |
Q |
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| T |
17392578 |
aagaattcaacaaccatagagcattgggaatatccagatcatgttccagaatgtgtttcgtctcatctaacaaaatttgaagttatagactatgaagctt |
17392677 |
T |
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| Q |
615 |
tggaagctgattttcaaatcaagacatatattttgcagaatgtgattgtgacttttacagattatgaccatttgtcattctctcgtcacccaaatccaat |
714 |
Q |
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| T |
17392678 |
gcgaagctgattttcgattcgcaacatatattttgcagaatgcga----gacttttacaagttatgaccattcatcatactct--tcacccaaatccaat |
17392771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 475 - 715
Target Start/End: Original strand, 17383826 - 17384061
Alignment:
| Q |
475 |
gagtatttttacaaatcctattttgtctttgatcgacaagaaaagaactcaacaa-catagagcattgggaatatccttatcatgttctagattgtgttt |
573 |
Q |
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||||||||||||| |||||||||||||| ||| |||| | |||| ||| ||| ||||||||||||||||||||| ||||||||| ||| ||||||| |
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| T |
17383826 |
gagtatttttacatatcctattttgtctcggattgacaggcggagaattcagcaagcatagagcattgggaatatccagatcatgttccagaatgtgttt |
17383925 |
T |
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| Q |
574 |
catctcatctaacagcattt-aaaatatagactatgaaccattggaagctgattttcaaatcaagacatatattttgcagaatgtgattgtgacttttac |
672 |
Q |
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| T |
17383926 |
cgtctaatctaacaaaatttgaagttatgcactatgaagcttgggaagctgattttcgattcgcaacatatattttgcagaatgcga----gacttttgc |
17384021 |
T |
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| Q |
673 |
agattatgaccatttgtcattctctcgtcacccaaatccaatg |
715 |
Q |
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| T |
17384022 |
aga-tatgaccatttgccatactct--tcacccaaatccaatg |
17384061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 474 - 587
Target Start/End: Original strand, 17377460 - 17377571
Alignment:
| Q |
474 |
tgagtatttttacaaatcctattttgtctttgatcgacaagaaaagaactcaacaa-catagagcattgggaatatccttatcatgttctagattgtgtt |
572 |
Q |
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| T |
17377460 |
tgagtatttttacaaatcctattttgtctcggatcgacaggcgaataattcaacaaccatag---attgggaatatccagatcatgttccagaatgtgtt |
17377556 |
T |
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| Q |
573 |
tcatctcatctaaca |
587 |
Q |
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| T |
17377557 |
tcgtctcatctaaca |
17377571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 155 - 234
Target Start/End: Original strand, 17398821 - 17398900
Alignment:
| Q |
155 |
ctcataatggggataacaaagagaaataaaagccttttctcatcatgctaaacaaaattaattattccataaaaaattat |
234 |
Q |
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| T |
17398821 |
ctcataattgagataacaaagagaaataagagctttttgccatcatgctaaacaaaagaaattattccacaaaaaattat |
17398900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 227 - 352
Target Start/End: Original strand, 17395245 - 17395366
Alignment:
| Q |
227 |
aaaattatcagcagactaatatagccaaaaaacaatcaataacgcaagttaacattgtcttctaaggtggagacagattaatagtccggtcaggcc-aaa |
325 |
Q |
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| T |
17395245 |
aaaattattagcaaactaatataatcaaataacaatcaatagcgcaagttaacagtttcttctaaggtgg-gaca----aatagtccagtcaaaccaaaa |
17395339 |
T |
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| Q |
326 |
tgctcaaaaccaaaccacataggaaaa |
352 |
Q |
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| T |
17395340 |
tgttcaaaatcaaaccacataggaaaa |
17395366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 4816540 - 4816584
Alignment:
| Q |
168 |
taacaaagagaaataaaagccttttctcatcatgctaaacaaaat |
212 |
Q |
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| T |
4816540 |
taacaaagagaaataagagccttttggcatcatgctaaacaaaat |
4816584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 8e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 474 - 656
Target Start/End: Complemental strand, 26052928 - 26052744
Alignment:
| Q |
474 |
tgagtatttttacaaatcctattttgtctttgatcgacaagaaaagaactcaacaac-atagagcattgggaatatccttatcatgttctagattgtgtt |
572 |
Q |
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| T |
26052928 |
tgagtatttttacaaatcctattttgtatcggattgacaggagaagtattcaacaaccatagagcattgggaatatccagatcatgttccagaatgtgtt |
26052829 |
T |
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| Q |
573 |
tcatctcatctaacagcattt-aaaatatagactatgaaccattggaagctgattttcaaatcaagacatatattttgcagaatg |
656 |
Q |
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| T |
26052828 |
tcatctcatctaacaaaatttgaagttatagactatgaagcttgtgaaactgatattcgattcgcaacatatattttgcagaatg |
26052744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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