View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16290_low_1 (Length: 424)
Name: NF16290_low_1
Description: NF16290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16290_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 133 - 418
Target Start/End: Original strand, 13879406 - 13879691
Alignment:
| Q |
133 |
cttgttcttgagcttaggaaccacaacttcaatgaaattgttctctatcattttggctttagtgttaacaaagtcgcagtgcttccctttcaagttaagt |
232 |
Q |
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| T |
13879406 |
cttgttcttgagcttaggaaccacaacttcaatgaaattgttctctatcattttggctttagtgttaacaaagtcgcagtgcttccctttcaagttaagt |
13879505 |
T |
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| Q |
233 |
gttactgaaaacagatttcgaccgggaagaacatcctcaatcctgagagtaccgtgatcaacacagacatcaatctcttccttcctcacgttgtcagcga |
332 |
Q |
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| T |
13879506 |
gttactgaaaacagatttcgaccgggaagaacatcctcaatcctgagagtaccgtgatcaacacagacatcaatctcttccttcctcacgttgtcagcga |
13879605 |
T |
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| Q |
333 |
caagattcgaccgcaaaatcacagactcctcagtctccgtaaaatcccagagaacaagatcatcatcatcgttgttgttgttgttg |
418 |
Q |
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| T |
13879606 |
caagattcgaccgcaaaatcacagactcctcagtctccgtaaaatcccagagaacaagatcatcatcatcatcgttgttgttgttg |
13879691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 133 - 405
Target Start/End: Original strand, 13875189 - 13875461
Alignment:
| Q |
133 |
cttgttcttgagcttaggaaccacaacttcaatgaaattgttctctatcattttggctttagtgttaacaaagtcgcagtgcttccctttcaagttaagt |
232 |
Q |
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|||||| |||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||| ||| |
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| T |
13875189 |
cttgttgttgagcttgggaaccacaatttcaaggaaattgttctctatcattttggctttagtgttaacaacgtcgaaatgcttccctttcaagtcgagt |
13875288 |
T |
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| Q |
233 |
gttactgaaaacagatttcgaccgggaagaacatcctcaatcctgagagtaccgtgatcaacacagacatcaatctcttccttcctcacgttgtcagcga |
332 |
Q |
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| T |
13875289 |
gtacctgaaaatcgatttcgacctggaagagcatccttaatcctgagagtaccgtgatcaacacagacatcaatctcttccttcctcacgttgttggcga |
13875388 |
T |
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| Q |
333 |
caagattcgaccgcaaaatcacagactcctcagtctccgtaaaatcccagagaacaagatcatcatcatcgtt |
405 |
Q |
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| T |
13875389 |
ccagattcaaccgaaaaatcaaagactcctcggtctcctcaaaatcacagagaacaagataatagtcatcgtt |
13875461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 13879274 - 13879344
Alignment:
| Q |
1 |
agtaactaaaaaactacttctctgttcatccctccctcttttaagtgaaacctaaaacatatctagatgag |
71 |
Q |
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| T |
13879274 |
agtaactaaaatactacttctctgttcatccctccctcttttaagtgaaacctaaaacatagctagatgag |
13879344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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