View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16290_low_3 (Length: 390)
Name: NF16290_low_3
Description: NF16290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16290_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 10 - 373
Target Start/End: Original strand, 44473805 - 44474175
Alignment:
| Q |
10 |
agaagaatagaaaagtcggagaggagaaaaggagatcgacctaacacctaagcaatggggtaaaggcaaaccattttatttatttttgttagttatatat |
109 |
Q |
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| T |
44473805 |
agaagaatagaaaagtcggagaggagaaaaggagatcgacctaacacctaagcaatggggtaaaggcaaaccattttatttatttttgttagttatatat |
44473904 |
T |
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| Q |
110 |
ttggtcttgt----------gttgtgttggtagaaagcagcaaaccatagtattattttgttttttatttcaaaaccacaacatgaatgtattatggttc |
199 |
Q |
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| T |
44473905 |
ttgctcttgtgttgtgttgtgttgtgttggtagaaagcagcaaaccatagtattattttgttttttatttcaaaaccacagcatgaatgtattatggttc |
44474004 |
T |
|
| Q |
200 |
tgttttattgattcttagtatccatatattatgattgtaatttcattgtttcttgtaaactgtaggtttgaagagacgttcaattattcaggtggggatg |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||| |
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| T |
44474005 |
ggttttattgattcttagtatccatatattatgattgtaatttcattgtttcttgtaaactgtaggtttgaagagacgttca---attcaagaggggatg |
44474101 |
T |
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| Q |
300 |
tctacgttggtaccttcaaggatggacttcgtgatggcaacggaaagtacacatggtcagatggatcaatatat |
373 |
Q |
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| T |
44474102 |
tctacgttggtatcttcaaggatggacttcctgatggcaacggaaagtacacatggtcagatggatcaatatat |
44474175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 4e-29; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 226 - 373
Target Start/End: Original strand, 39847928 - 39848072
Alignment:
| Q |
226 |
tattatgattgtaatttcattgtttcttgtaaactgtaggtttgaagagacgttcaattattcaggtggggatgtctacgttggtaccttcaaggatgga |
325 |
Q |
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| T |
39847928 |
tattatgattatgatttcattgtttcttgtaaactgtaggtttaaagagatgttg---tattcagatgagggtgtttacattggtaacatcaaggatgga |
39848024 |
T |
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| Q |
326 |
cttcgtgatggcaacggaaagtacacatggtcagatggatcaatatat |
373 |
Q |
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||| | ||||||| |||||||||||||||||||||||||||||||| |
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| T |
39848025 |
cttgctcatggcaaaagaaagtacacatggtcagatggatcaatatat |
39848072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 241 - 373
Target Start/End: Complemental strand, 38454294 - 38454165
Alignment:
| Q |
241 |
ttcattgtttcttgtaaactgtaggtttgaagagacgttcaattattcaggtggggatgtctacgttggtaccttcaaggatggacttcgtgatggcaac |
340 |
Q |
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| T |
38454294 |
ttcattgtttcttgtaaactgtaggtttaatcagatattc---tattcaaatggggatgtctacgttggtaacttcaaggatgaactttttcatggcaac |
38454198 |
T |
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| Q |
341 |
ggaaagtacacatggtcagatggatcaatatat |
373 |
Q |
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||||||| ||||| |||| ||||||| ||||| |
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| T |
38454197 |
ggaaagttcacattgtcatgtggatcagtatat |
38454165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 293 - 373
Target Start/End: Complemental strand, 34534216 - 34534136
Alignment:
| Q |
293 |
ggggatgtctacgttggtaccttcaaggatggacttcgtgatggcaacggaaagtacacatggtcagatggatcaatatat |
373 |
Q |
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| T |
34534216 |
ggggatgtctacattggtaacttcaagggtgaactttgtcatggcaacgggaagtacacatggtcagatggaacaatatat |
34534136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 298 - 373
Target Start/End: Original strand, 38632290 - 38632365
Alignment:
| Q |
298 |
tgtctacgttggtaccttcaaggatggacttcgtgatggcaacggaaagtacacatggtcagatggatcaatatat |
373 |
Q |
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||||||| |||||| |||||||| || ||||||| |||||| |||||||| || ||||||||||||||||| |||| |
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| T |
38632290 |
tgtctacattggtaacttcaagggtgaacttcgtcatggcagcggaaagtgcaaatggtcagatggatcaacatat |
38632365 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 221 - 372
Target Start/End: Complemental strand, 34916848 - 34916700
Alignment:
| Q |
221 |
ccatatattatgattgtaatttcattgtttcttgtaaactgtaggtttgaagagacgttcaattattcaggtggggatgtctacgttggtaccttcaagg |
320 |
Q |
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|||| |||||||||| | ||||||| |||||||||||| ||||| || |||||| || | | |||| ||||||||||||| |||||| ||||||| |
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| T |
34916848 |
ccatttattatgattatgatttcatcgtttcttgtaaagtgtagtgttaaagagaagtcc---ttttcaaatggggatgtctacattggtaaattcaagg |
34916752 |
T |
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| Q |
321 |
atggacttcgtgatggcaacggaaagtacacatggtcagatggatcaatata |
372 |
Q |
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| T |
34916751 |
gtgaacttctccatggcatgggaaagtacacatggacaaatggaacaatata |
34916700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 239 - 373
Target Start/End: Complemental strand, 7047054 - 7046923
Alignment:
| Q |
239 |
atttcattgtttcttgtaaactgtaggtttgaagagacgttcaattattcaggtggggatgtctacgttggtaccttcaaggatggacttcgtgatggca |
338 |
Q |
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|||||||||||||||||||| ||||||||| |||||| | || |||||| |||| ||||||| ||| || ||| |||| ||||| | |||||| |
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| T |
7047054 |
atttcattgtttcttgtaaattgtaggtttaaagagatgatc---tattcaaatgggagtgtctacattgataactttaaggggcaacttcatcatggca |
7046958 |
T |
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| Q |
339 |
acggaaagtacacatggtcagatggatcaatatat |
373 |
Q |
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| T |
7046957 |
acggaaactacacatggtcagatggatcaatatat |
7046923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 333 - 373
Target Start/End: Original strand, 32714059 - 32714099
Alignment:
| Q |
333 |
atggcaacggaaagtacacatggtcagatggatcaatatat |
373 |
Q |
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||||||| |||||||||||||||||| ||||| |||||||| |
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| T |
32714059 |
atggcaagggaaagtacacatggtcaaatggaacaatatat |
32714099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 333 - 373
Target Start/End: Original strand, 32716473 - 32716513
Alignment:
| Q |
333 |
atggcaacggaaagtacacatggtcagatggatcaatatat |
373 |
Q |
| |
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||||||| |||||||||||||||||| ||||| |||||||| |
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| T |
32716473 |
atggcaagggaaagtacacatggtcaaatggaacaatatat |
32716513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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