View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16291_high_2 (Length: 573)
Name: NF16291_high_2
Description: NF16291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16291_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 504; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 1 - 554
Target Start/End: Complemental strand, 43287303 - 43286749
Alignment:
| Q |
1 |
ataagaagtatagggaatccaagcaggctaaatatgtcagattaagttagtatcggtctcagcatttcagacttaaaaaaccctccaattactatacact |
100 |
Q |
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| T |
43287303 |
ataagaagtatagggaatccaagcaggctaaatatgtcagattaagttagtatcggtctcagcatttcagacttaaaaaaccctccaattactatacact |
43287204 |
T |
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| Q |
101 |
ctaaaatgacactaaatcatgcatataacagtaacattgaaaaatagttgaaacaccaaactacaatgattaaattaaatggacaaacaagaccataaag |
200 |
Q |
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| T |
43287203 |
ctaaaatgacactaaatcatgcatataacagtaacattgaaaaatagttgaaacaccaa-ctagaatgattaaattaaatggacaaataagaccataaag |
43287105 |
T |
|
| Q |
201 |
ttttgattgcattgatagtgtgggtaggggactagtttggccaatgccttataggttcatgatctgtgtccttatctcttatgtggatgtatcaatgtca |
300 |
Q |
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| T |
43287104 |
ttttgattgcattgatagtgtgggtaggggactagtttggccaatgccttataggttcatgatctgtgtccttatctcgtatgtggatgtatcaatgtca |
43287005 |
T |
|
| Q |
301 |
atttttgaagtttatgttataactatctaaccatgatttgacattgctcctttggttcattttgatttgcatcttacttggagcatgggattaaaatact |
400 |
Q |
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| T |
43287004 |
atttttgaagtttatgttataactatctaaccatgatttgacattgctcctttggttcattttgatttgcatcttatttggagcatgggattaaaatact |
43286905 |
T |
|
| Q |
401 |
ctggtcgaatgctcctttctgatagttgaaattgtcttcataaatgca-tgctcatgcatgttctcaacccaattta-ttcataatttgtaggattgaat |
498 |
Q |
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| T |
43286904 |
ctggtcgaatgctcctttctgatagttgaaattgtcttcataaatacattgctcatgcctgttctcaacccaatttatttcataatttgtaggattgaat |
43286805 |
T |
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| Q |
499 |
ttgaagctgattacattgggcaatttggcttctactaatgacatcggctggctatg |
554 |
Q |
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| T |
43286804 |
ttgaagctgattacattgggcaatctggcttctactaatgacatcggctggctatg |
43286749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 328 - 400
Target Start/End: Complemental strand, 29093043 - 29092971
Alignment:
| Q |
328 |
taaccatgatttgacattgctcctttggttcattttgatttgcatcttacttggagcatgggattaaaatact |
400 |
Q |
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| T |
29093043 |
taaccatgatttgacatggctcttttggttcattttgagttgtatcttacttggagcaaggaattaaattact |
29092971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 459 - 519
Target Start/End: Complemental strand, 1238023 - 1237963
Alignment:
| Q |
459 |
tgttctcaacccaatttattcataatttgtaggattgaatttgaagctgattacattgggc |
519 |
Q |
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| T |
1238023 |
tgttctcaatccaatttattcacaatttgcaggtttgaatttgaagcggattacattgggc |
1237963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 459 - 519
Target Start/End: Original strand, 1175418 - 1175478
Alignment:
| Q |
459 |
tgttctcaacccaatttattcataatttgtaggattgaatttgaagctgattacattgggc |
519 |
Q |
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| T |
1175418 |
tgttctcaacaaaatttattcacaatttgcaggtttgaatatgaagctgattacattgggc |
1175478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 459 - 519
Target Start/End: Complemental strand, 794437 - 794377
Alignment:
| Q |
459 |
tgttctcaacccaatttattcataatttgtaggattgaatttgaagctgattacattgggc |
519 |
Q |
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| T |
794437 |
tgttctcaatccaatatattcataatttgaaggtttgaatttgaatacgattacattgggc |
794377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 451 - 519
Target Start/End: Complemental strand, 29088963 - 29088895
Alignment:
| Q |
451 |
ctcatgcatgttctcaacccaatttattcataatttgtaggattgaatttgaagctgattacattgggc |
519 |
Q |
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| T |
29088963 |
ctcatgcttattctcaatccaatgtattcacaatttgcagttttgaatttgaagttgattacattgggc |
29088895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 459 - 511
Target Start/End: Complemental strand, 2928097 - 2928045
Alignment:
| Q |
459 |
tgttctcaacccaatttattcataatttgtaggattgaatttgaagctgatta |
511 |
Q |
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| T |
2928097 |
tgttctcaacccaatttattcacaatttgcaggtttgaatttgaagctgatta |
2928045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 448 - 519
Target Start/End: Original strand, 2311162 - 2311233
Alignment:
| Q |
448 |
atgctcatgcatgttctcaacccaatttattcataatttgtaggattgaatttgaagctgattacattgggc |
519 |
Q |
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| T |
2311162 |
atgcttatgcttgttctcaacccactttattcacaatttgcatgtttgaatttgaagctgattacatcgggc |
2311233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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