View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16291_high_5 (Length: 399)
Name: NF16291_high_5
Description: NF16291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16291_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 366; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 381
Target Start/End: Original strand, 5642971 - 5643352
Alignment:
| Q |
1 |
acatagctccacacccagaatacaaatctaataaagtccactctctatcagattctttaattttagacaatccttcttcagccacattattatcagttgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5642971 |
acatagctccacacccagaatacaaatctaataaagtccactctctatcagattctttaattttagacaatccttcttcagccacattattatcagttgc |
5643070 |
T |
|
| Q |
101 |
acaggcattggacccagattcacttgatattgttgaagtctcactttctattttgtcagtctcgctttctatttttgaaggttctgaatcaatcaaggaa |
200 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5643071 |
acatgcattggacccagattcacttgatattgttgaagtctcactttctattttgtcagtctcgctttctatttttgaaggttctgaatcaatcaaggaa |
5643170 |
T |
|
| Q |
201 |
aaccacaatcaacat-aaaaaattcagtaaagttacatagaagaaacttaaagaaatcatcataattaaattatgaaatcataccattgtcaatgcttga |
299 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5643171 |
aaccacaataaacataaaaaaattcagtaaagttacatagaagaaacttaaagaaatcatcataattaaattatgaaatcataccattgtcaatgcttga |
5643270 |
T |
|
| Q |
300 |
aaaagttagatatggcaaagtgtatttcatatcataatatagatcacaaggaggaacattcttctctttagcatcctgtagt |
381 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5643271 |
aaaagttagatatggcaaagtgtatttcatatcataatatagatcacaaggaggaacattcttctctttagcatcctgtagt |
5643352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 158 - 381
Target Start/End: Original strand, 46630159 - 46630383
Alignment:
| Q |
158 |
agtctcgctttctatttttgaaggttctgaatcaatcaaggaaaaccacaatcaacataaaaaattcag-taaagttacatagaagaaacttaaagaaat |
256 |
Q |
| |
|
|||||||||||||||| | | |||| ||| |||||||| || |||||||||||||||||||||| | | ||||| ||||| ||||||||||| ||| |
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|
| T |
46630159 |
agtctcgctttctattctggcaggtgctgtatcaatcagggcaaaccacaatcaacataaaaaaaaccggtaaaggtacatgcaagaaacttaagcaaac |
46630258 |
T |
|
| Q |
257 |
catcataattaaattatgaaatcataccattgtcaatgcttgaaaaagttagatatggcaaagtgtatttcatatcataatatagatcacaaggaggaac |
356 |
Q |
| |
|
|||| ||||| || |||||||||||||||||||||||| | || ||||||| |||||| | |||||| ||||||||| |||| | |||| |||||||| |
|
|
| T |
46630259 |
catcgtaatttaaatatgaaatcataccattgtcaatgttggagaaagttaaatatggtacagtgtacttcatatcaaaataaaattcactaggaggaat |
46630358 |
T |
|
| Q |
357 |
attcttctctttagcatcctgtagt |
381 |
Q |
| |
|
||||||| ||| ||| ||| |||| |
|
|
| T |
46630359 |
tttcttcttttttgcagcctttagt |
46630383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 158 - 381
Target Start/End: Original strand, 1341061 - 1341287
Alignment:
| Q |
158 |
agtctcgctttctatttttgaaggttctgaatcaatcaaggaaaaccacaatcaacataaaaaa---ttcagtaaagttacatagaagaaacttaaagaa |
254 |
Q |
| |
|
|||||| ||||||||||| | |||| || |||||||| || |||||||||||||||||||||| || || |||||||||| |||||||||||| || |
|
|
| T |
1341061 |
agtctcactttctattttggcaggtgatgtatcaatcagggtaaaccacaatcaacataaaaaaaagtttagcaaagttacatgcaagaaacttaaacaa |
1341160 |
T |
|
| Q |
255 |
atcatcataattaaattatgaaatcataccattgtcaatgcttgaaaaagttagatatggcaaagtgtatttcatatcataatatagatcacaaggagga |
354 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||| |||| || |||| |||||||| |||||| ||||| ||| |||| | |||||||||||| |
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|
| T |
1341161 |
atcatcataattaaattatgaaatcataccattgccaacatttgagaacgttaaatatggcacagtgtacttcatgtcaaaatagaattcacaaggagga |
1341260 |
T |
|
| Q |
355 |
acattcttctctttagcatcctgtagt |
381 |
Q |
| |
|
| ||||||| ||| ||| |||||||| |
|
|
| T |
1341261 |
attttcttcttttttgcagcctgtagt |
1341287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 1340922 - 1341079
Alignment:
| Q |
1 |
acatagctccacacccagaatacaaatctaataaagtccactct---ctatcagattctttaattttagacaatccttcttcagccacattattatcagt |
97 |
Q |
| |
|
|||||||||||||||||||||||||||| | |||||||||||| |||| | |||||||||||| | || ||||| | || |||| ||||||| |
|
|
| T |
1340922 |
acatagctccacacccagaatacaaatccagtaaagtccactcaggcctattacattctttaatttgacttgatttttctttaaccgcatttttatcagc |
1341021 |
T |
|
| Q |
98 |
tgcacaggcattggacccagattcacttgatattgttgaagtctcactttctattttg |
155 |
Q |
| |
|
|||| | ||||| |||||||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
1341022 |
tgcatggacattgtacccagattcacttgaaagtgttgaagtctcactttctattttg |
1341079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 84; Significance: 8e-40; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 158 - 381
Target Start/End: Original strand, 9393234 - 9393457
Alignment:
| Q |
158 |
agtctcgctttctatttttgaaggttctgaatcaatcaaggaaaaccacaatcaacataaaaaattcagtaaagttacatagaagaaacttaaagaaatc |
257 |
Q |
| |
|
|||||||||||||||| | | | || ||| |||||||| || ||||||||||||||| ||||||| | |||||| |||| ||||||||||| ||||| |
|
|
| T |
9393234 |
agtctcgctttctattatggcatgtgctgtatcaatcagggcaaaccacaatcaacaaaaaaaatacggtaaagctacaagcaagaaacttaagcaaatc |
9393333 |
T |
|
| Q |
258 |
atcataattaaattatgaaatcataccattgtcaatgcttgaaaaagttagatatggcaaagtgtatttcatatcataatatagatcacaaggaggaaca |
357 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| | || ||||||| |||||||| | |||| ||||||||| |||| | ||||||||||||| |
|
|
| T |
9393334 |
atcataattaatttatgaaatcataccattgtcaatattagagaaagttaaatatggcacattgtacttcatatcaaaatagaagtcacaaggaggaatt |
9393433 |
T |
|
| Q |
358 |
ttcttctctttagcatcctgtagt |
381 |
Q |
| |
|
||||||| ||| ||| |||||||| |
|
|
| T |
9393434 |
ttcttcttttttgcagcctgtagt |
9393457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 9393095 - 9393249
Alignment:
| Q |
1 |
acatagctccacacccagaatacaaatctaataaagtccactct---ctatcagattctttaattttagacaatccttcttcagccacattattatcagt |
97 |
Q |
| |
|
|||||||||||||||||||||||||||| | |||||||||||| |||| |||||||||||||| | | ||||| | || | || |||||||| |
|
|
| T |
9393095 |
acatagctccacacccagaatacaaatccagtaaagtccactcaggcctattagattctttaatttgtgttgacttttctttaaccccttttttatcagt |
9393194 |
T |
|
| Q |
98 |
tgcacaggcattggacccagattcacttgatattgttgaagtctcactttctatt |
152 |
Q |
| |
|
||||| | |||||||||||||||||||||| | |||||||||||| ||||||||| |
|
|
| T |
9393195 |
tgcacggacattggacccagattcacttgaaagtgttgaagtctcgctttctatt |
9393249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 158 - 381
Target Start/End: Original strand, 31942864 - 31943087
Alignment:
| Q |
158 |
agtctcgctttctatttttgaaggttctgaatcaatcaaggaaaaccacaatcaacataaaaaattcagtaaagttacatagaagaaacttaaagaaatc |
257 |
Q |
| |
|
||||| |||||||||| | | |||| ||| |||||||| || |||||| |||||||||||||||||| || ||| ||||| ||||||||||| ||||| |
|
|
| T |
31942864 |
agtcttgctttctattatggcaggtgctgtatcaatcagggcaaaccataatcaacataaaaaattcggtgaagctacatgcaagaaacttaagcaaatc |
31942963 |
T |
|
| Q |
258 |
atcataattaaattatgaaatcataccattgtcaatgcttgaaaaagttagatatggcaaagtgtatttcatatcataatatagatcacaaggaggaaca |
357 |
Q |
| |
|
||||||||||| ||| |||||||||||||||||||| | | ||||||| |||||||| |||||| |||||||| |||| | ||||||||||||| |
|
|
| T |
31942964 |
atcataattaatttacaaaatcataccattgtcaatgttacagaaagttaaatatggcacagtgtacttcatatcgaaatagaagtcacaaggaggaatt |
31943063 |
T |
|
| Q |
358 |
ttcttctctttagcatcctgtagt |
381 |
Q |
| |
|
||||||| ||| ||| |||||||| |
|
|
| T |
31943064 |
ttcttcttttttgcagcctgtagt |
31943087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 31942725 - 31942879
Alignment:
| Q |
1 |
acatagctccacacccagaatacaaatctaataaagtccactc---tctatcagattctttaattttagacaatccttcttcagccacattattatcagt |
97 |
Q |
| |
|
|||||||||||||||||||||||||||| | |||||||||||| |||| |||||||||||||| || || ||||| | || | || |||||||| |
|
|
| T |
31942725 |
acatagctccacacccagaatacaaatccagtaaagtccactcgcgcctattagattctttaatttgagttgatttttctttaacccctttcttatcagt |
31942824 |
T |
|
| Q |
98 |
tgcacaggcattggacccagattcacttgatattgttgaagtctcactttctatt |
152 |
Q |
| |
|
|||| | |||||||||||||||||||||| | ||||||||||| ||||||||| |
|
|
| T |
31942825 |
tgcatggacattggacccagattcacttgaaagtgttgaagtcttgctttctatt |
31942879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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