View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16291_low_1 (Length: 699)

Name: NF16291_low_1
Description: NF16291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16291_low_1
NF16291_low_1
[»] chr6 (12 HSPs)
chr6 (12-686)||(26247214-26247894)
chr6 (392-492)||(17168436-17168536)
chr6 (354-477)||(34446566-34446690)
chr6 (352-424)||(34595183-34595255)
chr6 (416-496)||(6389725-6389805)
chr6 (446-504)||(10760868-10760926)
chr6 (357-470)||(8389411-8389523)
chr6 (354-424)||(16766757-16766827)
chr6 (431-477)||(7625123-7625169)
chr6 (354-406)||(8776908-8776961)
chr6 (392-420)||(14155210-14155238)
chr6 (431-491)||(19602193-19602253)
[»] chr3 (11 HSPs)
chr3 (355-472)||(21149073-21149185)
chr3 (362-478)||(12704599-12704716)
chr3 (354-477)||(25074790-25074914)
chr3 (377-496)||(25651988-25652108)
chr3 (355-477)||(15864834-15864950)
chr3 (371-477)||(14223805-14223911)
chr3 (405-471)||(25892467-25892533)
chr3 (353-425)||(18426997-18427069)
chr3 (448-496)||(24205070-24205118)
chr3 (399-483)||(25326421-25326505)
chr3 (354-477)||(8903433-8903554)
[»] chr4 (10 HSPs)
chr4 (352-477)||(3144585-3144710)
chr4 (350-477)||(24343508-24343636)
chr4 (352-424)||(2361913-2361985)
chr4 (362-491)||(20743214-20743350)
chr4 (353-424)||(34306743-34306814)
chr4 (406-475)||(23386148-23386218)
chr4 (356-406)||(28000672-28000723)
chr4 (416-471)||(31243545-31243600)
chr4 (448-503)||(32910526-32910581)
chr4 (432-471)||(55941016-55941055)
[»] chr1 (6 HSPs)
chr1 (354-483)||(42004882-42005011)
chr1 (352-496)||(6936332-6936477)
chr1 (408-477)||(40747762-40747831)
chr1 (354-406)||(15323234-15323287)
chr1 (352-424)||(17831460-17831533)
chr1 (436-504)||(22515904-22515972)
[»] chr5 (8 HSPs)
chr5 (363-503)||(43554493-43554636)
chr5 (431-477)||(42469222-42469268)
chr5 (57-130)||(33277155-33277228)
chr5 (390-460)||(26205731-26205801)
chr5 (354-419)||(30098391-30098456)
chr5 (432-477)||(2577193-2577238)
chr5 (448-477)||(18162056-18162085)
chr5 (421-477)||(18288053-18288109)
[»] chr7 (10 HSPs)
chr7 (376-496)||(4017751-4017871)
chr7 (354-477)||(7133212-7133336)
chr7 (371-473)||(5938477-5938580)
chr7 (429-477)||(13427577-13427625)
chr7 (448-496)||(43249975-43250023)
chr7 (390-477)||(23930220-23930307)
chr7 (413-471)||(29812658-29812716)
chr7 (355-427)||(11665370-11665442)
chr7 (408-477)||(38804544-38804613)
chr7 (436-496)||(11061093-11061153)
[»] scaffold0199 (1 HSPs)
scaffold0199 (356-477)||(1950-2066)
[»] chr8 (10 HSPs)
chr8 (356-477)||(1676713-1676829)
chr8 (431-475)||(35431152-35431196)
chr8 (377-472)||(8017492-8017587)
chr8 (377-471)||(14513131-14513226)
chr8 (391-492)||(22850330-22850431)
chr8 (371-424)||(14659652-14659706)
chr8 (433-483)||(16869729-16869779)
chr8 (355-424)||(24205749-24205818)
chr8 (435-477)||(30068044-30068086)
chr8 (448-492)||(44067502-44067546)
[»] chr2 (7 HSPs)
chr2 (355-477)||(23354582-23354710)
chr2 (356-477)||(23354926-23355053)
chr2 (392-492)||(37986765-37986865)
chr2 (433-477)||(22085005-22085049)
chr2 (354-424)||(35056928-35056998)
chr2 (431-472)||(24011042-24011083)
chr2 (409-477)||(19573979-19574047)
[»] scaffold0036 (1 HSPs)
scaffold0036 (353-424)||(35670-35742)
[»] scaffold0053 (1 HSPs)
scaffold0053 (350-424)||(8847-8921)
[»] scaffold0007 (1 HSPs)
scaffold0007 (448-496)||(225297-225345)


Alignment Details
Target: chr6 (Bit Score: 454; Significance: 0; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 12 - 686
Target Start/End: Complemental strand, 26247894 - 26247214
Alignment:
Q  12 atcatcaagaaggccattgaaaagcttggattgaggcataaggaacacattgctgcttatggagaaggaaatgagagacgtctcactggaaaacatgaaa 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  26247894 atcatcaagaaggccattgaaaagcttggattgaggcataaggaacacattgctgcctatggagaaggaaatgagagacgtctcactggaaaacatgaaa 26247795  T
Q  112 cagcagacatcaacaccttttcttgggtcagttctttacattctttaacaattggctagaagtattctgaatatgcctaacaattagtgnnnnnnnttga 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||       ||||    
T  26247794 cagcagacatcaacaccttttcttgggtcagttctttacattctttaactattggctagaagtattctgaatatgcctaacaattagtgaaaaaaattga 26247695  T
Q  212 aattttcctcatattggtaacaggtaccnnnnnnnnnnn--gatttttcaataacaaactagggttttggtacttcttagggtttgaatgatggacttta 309  Q
    ||||||||||||||||||||||  ||||             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26247694 aattttcctcatattggtaacaaataccaaaaaaaaaaaaagatttttcaataacaaactagggttttggtacttcttagggtttgaatgatggacttta 26247595  T
Q  310 gatataaggacatattgttgagcttggtaacacagaattgtgatctatgaaacacggacattcctcagattaggtgtgttcggtgtcagacacgtgttgg 409  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  26247594 gatataaggacatattgttgagcttggtaacacagacttgtgatctatgaaacacggacactcctcagattaggtgtgttcggtgtcagacacgtgttgg 26247495  T
Q  410 tgtccgacaccgacatgaaatctatgattatactaaaatatgtcattttcttaaattattatccgtgtttgtgtgtcag------tgtccgtgcttcata 503  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||      |||||||||||||||    
T  26247494 tgtccgacaccgacacgaaacctatgattatactaaaatatgtcattttcttaaattattatccgtatctgtgtgtcagtgtcagtgtccgtgcttcata 26247395  T
Q  504 gcttgtgatctaaataggaacgttaagatgttgaaaggtcctttactgtgtgcaaaaataaaat-ta-gagggcatattcttcttttnnnnnnnnttaag 601  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||  ||||| || |||||||||||||||||||         ||||    
T  26247394 gcttgtgatctaaataggaacgttaagatgttggaaggtcctttactgtgtgccaaacaaaaatatacgagggcatattcttctttttaaaaaa--taag 26247297  T
Q  602 gaa-ttat-aaatattttcaaagataagaatcaagtacgattgcaatattatacaattagttatcataacatagcttaatgtttttg 686  Q
    ||| |||| || ||||||||||||||||||||||    ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  26247296 gaagttatcaattattttcaaagataagaatcaa----gattgaaatattatacaattagttatcataacatagcttaatgtttttg 26247214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 392 - 492
Target Start/End: Original strand, 17168436 - 17168536
Alignment:
Q  392 gtgtcagacacgtgttggtgtccgacaccgacatgaaatctatgattatactaaaatatgtcattttcttaaattattatccgtgtttgtgtgtcagtgt 491  Q
    |||| ||||||||||  |||||||||||||||| || | |||| |||| |||||| ||| ||||||||| ||||||||||| ||||| | ||||||||||    
T  17168436 gtgttagacacgtgtcagtgtccgacaccgacacgacacctattattacactaaattatatcattttctcaaattattatcagtgttggcgtgtcagtgt 17168535  T
Q  492 c 492  Q
    |    
T  17168536 c 17168536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 354 - 477
Target Start/End: Complemental strand, 34446690 - 34446566
Alignment:
Q  354 ctatgaaacacggacattcctcagattaggtgtgttcg-gtgtcagacacgtgttggtgtccgacaccgacatgaaatctatgattatactaaaatatgt 452  Q
    ||||||| |||||||| ||||  |||||||||||| |  |||||||| ||| || |||||  |||||||||| || | ||||||||| ||| || |||||    
T  34446690 ctatgaagcacggacactccttggattaggtgtgtcccagtgtcagatacgcgtcggtgttggacaccgacacgacacctatgattacactgaattatgt 34446591  T
Q  453 cattttcttaaattattatccgtgt 477  Q
    |||||||| ||||||||||||||||    
T  34446590 cattttctcaaattattatccgtgt 34446566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 352 - 424
Target Start/End: Complemental strand, 34595255 - 34595183
Alignment:
Q  352 atctatgaaacacggacattcctcagattaggtgtgt-tcggtgtcagacacgtgttggtgtccgacaccgaca 424  Q
    ||||||||| |||||||| ||||| ||||||||||||  |||||||||||||||| | ||||||||||||||||    
T  34595255 atctatgaagcacggacactcctcggattaggtgtgtcccggtgtcagacacgtg-tcgtgtccgacaccgaca 34595183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 416 - 496
Target Start/End: Complemental strand, 6389805 - 6389725
Alignment:
Q  416 acaccgacatgaaatctatgattatactaaaatatgtcattttcttaaattattatccgtgtttgtgtgtcagtgtccgtg 496  Q
    ||||||||| || | ||||||||| |||||| ||| ||||||||| ||||||||||||||||  | |||| ||||||||||    
T  6389805 acaccgacacgacacctatgattacactaaattatatcattttctcaaattattatccgtgtcggcgtgtgagtgtccgtg 6389725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 446 - 504
Target Start/End: Original strand, 10760868 - 10760926
Alignment:
Q  446 aatatgtcattttcttaaattattatccgtgtttgtgtgtcagtgtccgtgcttcatag 504  Q
    ||||||||||||||| ||||||||||| ||||    |||||||||||||||||||||||    
T  10760868 aatatgtcattttctcaaattattatcagtgtcgacgtgtcagtgtccgtgcttcatag 10760926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 357 - 470
Target Start/End: Original strand, 8389411 - 8389523
Alignment:
Q  357 tgaaacacggacattcctcagattaggtgtgt-tcggtgtcagaca-cgtgttggtgtccgacaccgacatgaaatctatgattatactaaaatatgtca 454  Q
    |||| |||||||| ||||| ||||||||||||  ||||||| |||| |||||||  ||||||||||||||||| | |||| |||| ||| || ||| | |    
T  8389411 tgaagcacggacactcctcggattaggtgtgtcccggtgtcggacaccgtgttg--gtccgacaccgacatgaca-ctataattacactgaattatatga 8389507  T
Q  455 ttttcttaaattatta 470  Q
    ||||||||||||||||    
T  8389508 ttttcttaaattatta 8389523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 354 - 424
Target Start/End: Complemental strand, 16766827 - 16766757
Alignment:
Q  354 ctatgaaacacggacattcctcagattaggtgtgt-tcggtgtcagacacgtgttggtgtccgacaccgaca 424  Q
    ||||||| ||||||||||| || ||||||| ||||  ||||||| |||||||||| ||||||||||||||||    
T  16766827 ctatgaagcacggacattcttcggattaggcgtgtcccggtgtcggacacgtgtt-gtgtccgacaccgaca 16766757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 431 - 477
Target Start/End: Complemental strand, 7625169 - 7625123
Alignment:
Q  431 ctatgattatactaaaatatgtcattttcttaaattattatccgtgt 477  Q
    |||| ||||||||||| ||| ||||||||| ||||||||||||||||    
T  7625169 ctataattatactaaattatatcattttctcaaattattatccgtgt 7625123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 406
Target Start/End: Original strand, 8776908 - 8776961
Alignment:
Q  354 ctatgaaacacggacattcctcagattaggtgtgt-tcggtgtcagacacgtgt 406  Q
    ||||||| |||||||| ||||| |||||||||||| |||||||| |||||||||    
T  8776908 ctatgaagcacggacactcctcggattaggtgtgtctcggtgtcggacacgtgt 8776961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 392 - 420
Target Start/End: Original strand, 14155210 - 14155238
Alignment:
Q  392 gtgtcagacacgtgttggtgtccgacacc 420  Q
    |||||||||||||||||||||||||||||    
T  14155210 gtgtcagacacgtgttggtgtccgacacc 14155238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 431 - 491
Target Start/End: Original strand, 19602193 - 19602253
Alignment:
Q  431 ctatgattatactaaaatatgtcattttcttaaattattatccgtgtttgtgtgtcagtgt 491  Q
    ||||||||| ||| || ||| ||||||||| ||||||||||| ||||| ||||||| ||||    
T  19602193 ctatgattacactgaattatatcattttctcaaattattatcagtgttggtgtgtccgtgt 19602253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 5e-24; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 355 - 472
Target Start/End: Complemental strand, 21149185 - 21149073
Alignment:
Q  355 tatgaaacacggacattcctcagattaggtgtgttcggtgtcagacacgtgttggtgtccgacaccgacatgaaatctatgattatactaaaatatgtca 454  Q
    |||||||||| |||||||||| ||||||||||||||||||||||||||  |||||||||||||| ||||||     || |||||| ||| || |||||||    
T  21149185 tatgaaacacagacattcctcggattaggtgtgttcggtgtcagacacacgttggtgtccgacaacgacat-----ctttgattacactgaattatgtca 21149091  T
Q  455 ttttcttaaattattatc 472  Q
    |||||| |||||||||||    
T  21149090 ttttctcaaattattatc 21149073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 362 - 478
Target Start/End: Original strand, 12704599 - 12704716
Alignment:
Q  362 cacggacattcctcagattaggtgtgttc-ggtgtcagacacgtgttggtgtccgacaccgacatgaaatctatgattatactaaaatatgtcattttct 460  Q
    |||||||| ||||  ||||||  |||||| |||||| |||| | |||||||||||||||||||| || | ||||||||| | | || ||||||||||| |    
T  12704599 cacggacactcctaggattagacgtgttctggtgtcggacatgcgttggtgtccgacaccgacacgacacctatgattacattgaattatgtcatttttt 12704698  T
Q  461 taaattattatccgtgtt 478  Q
     |||||||||||||||||    
T  12704699 caaattattatccgtgtt 12704716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 354 - 477
Target Start/End: Complemental strand, 25074914 - 25074790
Alignment:
Q  354 ctatgaaacacggacattcctcagattaggtgtgttcg-gtgtcagacacgtgttggtgtccgacaccgacatgaaatctatgattatactaaaatatgt 452  Q
    ||||||| |||| ||| ||||| |||||||||||| |  ||||| |||||| ||||||||| ||||||||||  |   ||||||||| ||| || |||||    
T  25074914 ctatgaagcacgaacactcctcggattaggtgtgtcccagtgtcggacacgcgttggtgtcagacaccgacacaacgcctatgattacactcaattatgt 25074815  T
Q  453 cattttcttaaattattatccgtgt 477  Q
    |||||||| ||||||||||| ||||    
T  25074814 cattttctcaaattattatcggtgt 25074790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 377 - 496
Target Start/End: Original strand, 25651988 - 25652108
Alignment:
Q  377 gattaggtgtgt-tcggtgtcagacacgtgttggtgtccgacaccgacatgaaatctatgattatactaaaatatgtcattttcttaaattattatccgt 475  Q
    |||||||||||| ||||||||  |||||||| ||||||| |||| ||||  | | |||| | || ||| || ||| ||||||||| ||||||||||||||    
T  25651988 gattaggtgtgtctcggtgtcgaacacgtgtcggtgtccaacactgacacaacacctataactacactgaattatatcattttctcaaattattatccgt 25652087  T
Q  476 gtttgtgtgtcagtgtccgtg 496  Q
    ||| | |||| ||||||||||    
T  25652088 gttggcgtgttagtgtccgtg 25652108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 355 - 477
Target Start/End: Complemental strand, 15864950 - 15864834
Alignment:
Q  355 tatgaaacacggacattcctcagattaggtgtgttcggtgtcagacacgtgttggtgtccgacaccgacatgaaatctatgattatactaaaatatgtca 454  Q
    |||||| |||||||| || |  ||||||| |||| | ||||||||||||||| ||||||||||||      || | ||||||||| |||||| ||| |||    
T  15864950 tatgaagcacggacactctttggattaggcgtgtcccgtgtcagacacgtgtcggtgtccgacac------gacacctatgattacactaaattatatca 15864857  T
Q  455 ttttcttaaattattatccgtgt 477  Q
    |||| | ||||||||||||||||    
T  15864856 ttttttcaaattattatccgtgt 15864834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 371 - 477
Target Start/End: Original strand, 14223805 - 14223911
Alignment:
Q  371 tcctcagattaggtgtgttcggtgtcagacacgtgttggtgtccgacaccgacatgaaatctatgattatactaaaatatgtcattttcttaaattatta 470  Q
    ||||||||||||| |||| |  |||| ||||||||| |||||| |||||||||| || |  ||||| || |||||| ||| || |||||| |||||||||    
T  14223805 tcctcagattaggcgtgtcccatgtcggacacgtgtcggtgtcggacaccgacacgacacttatgaatacactaaattatatcgttttctcaaattatta 14223904  T
Q  471 tccgtgt 477  Q
    || ||||    
T  14223905 tctgtgt 14223911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 405 - 471
Target Start/End: Complemental strand, 25892533 - 25892467
Alignment:
Q  405 gttggtgtccgacaccgacatgaaatctatgattatactaaaatatgtcattttcttaaattattat 471  Q
    ||||||||||||||| |||| || | ||||||||| ||| || ||| ||||||||||||||||||||    
T  25892533 gttggtgtccgacactgacacgacacctatgattacactgaattatatcattttcttaaattattat 25892467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 353 - 425
Target Start/End: Complemental strand, 18427069 - 18426997
Alignment:
Q  353 tctatgaaacacggacattcctcagattaggtgtgt-tcggtgtcagacacgtgttggtgtccgacaccgacat 425  Q
    ||||||||||||||||| ||||||||||||||||||  ||||| | |||||||| | || ||||||||||||||    
T  18427069 tctatgaaacacggacactcctcagattaggtgtgtcccggtgccggacacgtg-tcgtatccgacaccgacat 18426997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 448 - 496
Target Start/End: Original strand, 24205070 - 24205118
Alignment:
Q  448 tatgtcattttcttaaattattatccgtgtttgtgtgtcagtgtccgtg 496  Q
    ||||||||||||| ||||||||||||||||  | |||||||||||||||    
T  24205070 tatgtcattttctcaaattattatccgtgtcggcgtgtcagtgtccgtg 24205118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 399 - 483
Target Start/End: Complemental strand, 25326505 - 25326421
Alignment:
Q  399 acacgtgttggtgtccgacaccgacatgaaatctatgattatactaaaatatgtcattttcttaaattattatccgtgtttgtgt 483  Q
    ||||| || ||||||||||||| ||| || |||||| |||| |||||| ||| | ||||| ||||||||||||| ||||| ||||    
T  25326505 acacgcgtcggtgtccgacaccaacacgacatctataattacactaaattatattatttttttaaattattatctgtgttggtgt 25326421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 354 - 477
Target Start/End: Complemental strand, 8903554 - 8903433
Alignment:
Q  354 ctatgaaacacggacattcctcagattaggtgtgttcggtgtcagacacgtgttggtgtccgacaccgacatgaaatctatgattatactaaaatatgtc 453  Q
    ||||||| |||| ||| ||||| |||||||||||| | | ||| ||||||  | |||||||| || ||||| || | |||| |||| |||||| ||||||    
T  8903554 ctatgaagcacgaacactcctcggattaggtgtgtcccg-gtcggacacgcataggtgtccggcatcgacacgacacctataattacactaaa-tatgtc 8903457  T
Q  454 attttcttaaattattatccgtgt 477  Q
    ||||||| ||| ||||||||||||    
T  8903456 attttctcaaaatattatccgtgt 8903433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 1e-21; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 352 - 477
Target Start/End: Original strand, 3144585 - 3144710
Alignment:
Q  352 atctatgaaacacggacattcctcagattaggtgtgttcggtgtcagacacgtgttggtgtccgacaccgacatgaaatctatgattatactaaaatatg 451  Q
    ||||||||| |||||||| | ||| ||||||||||||   ||||  |||||| ||||||||| |||||||||| || | ||||||||| |||||| |||     
T  3144585 atctatgaagcacggacacttctcggattaggtgtgtctcgtgttggacacgcgttggtgtctgacaccgacacgacacctatgattacactaaattata 3144684  T
Q  452 tcattttcttaaattattatccgtgt 477  Q
    ||||||||| ||||||||||||||||    
T  3144685 tcattttctgaaattattatccgtgt 3144710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 350 - 477
Target Start/End: Complemental strand, 24343636 - 24343508
Alignment:
Q  350 tgatctatgaaacacggacattcctcagattaggtgtgttc-ggtgtcagacacgtgttggtgtccgacaccgacatgaaatctatgattatactaaaat 448  Q
    ||||||||||| |||||||| |||||||| |||| |||| | |||||| |||||| || |||||| |||||||||| || | |||| |||| ||| || |    
T  24343636 tgatctatgaagcacggacactcctcagaataggcgtgtcccggtgtcggacacgcgtcggtgtcggacaccgacacgacacctataattacactgaatt 24343537  T
Q  449 atgtcattttcttaaattattatccgtgt 477  Q
    |||| ||||||| ||||||||||||||||    
T  24343536 atgtaattttctcaaattattatccgtgt 24343508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 352 - 424
Target Start/End: Original strand, 2361913 - 2361985
Alignment:
Q  352 atctatgaaacacggacattcctcagattaggtgtgt-tcggtgtcagacacgtgttggtgtccgacaccgaca 424  Q
    ||||||||| |||||||| || ||||||||||||||| ||||||||||||||| | | ||||||||||||||||    
T  2361913 atctatgaagcacggacactcgtcagattaggtgtgtctcggtgtcagacacgag-tcgtgtccgacaccgaca 2361985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 362 - 491
Target Start/End: Original strand, 20743214 - 20743350
Alignment:
Q  362 cacggacattcctcagattaggtgtgttc-ggtgtcagacacgtgttggtgtc------cgacaccgacatgaaatctatgattatactaaaatatgtca 454  Q
    |||||||| || || |||||| ||||||| |||||| ||||||||| ||||||      |||||||||||  | | ||||||||| ||| || |||||||    
T  20743214 cacggacactcatcggattagatgtgttccggtgtcggacacgtgtcggtgtctgacatcgacaccgacacaacacctatgattacactgaattatgtca 20743313  T
Q  455 ttttcttaaattattatccgtgtttgtgtgtcagtgt 491  Q
    |||||| ||||||||||||||||  | ||||||||||    
T  20743314 ttttctcaaattattatccgtgtcggcgtgtcagtgt 20743350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 353 - 424
Target Start/End: Original strand, 34306743 - 34306814
Alignment:
Q  353 tctatgaaacacggacattcctcagattaggtgtgt-tcggtgtcagacacgtgttggtgtccgacaccgaca 424  Q
    |||||||| |||| ||||||||||||||||| |||| |||||||| |||||||| | ||||||||||||||||    
T  34306743 tctatgaagcacgaacattcctcagattaggcgtgtctcggtgtcggacacgtg-tcgtgtccgacaccgaca 34306814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 406 - 475
Target Start/End: Complemental strand, 23386218 - 23386148
Alignment:
Q  406 ttggtgtccgacaccgacatgaaatctatgattatactaaaatatgtca-ttttcttaaattattatccgt 475  Q
    |||||||||||||||||||||| | ||||||||| |||||| ||| ||| |||| ||||||||| ||||||    
T  23386218 ttggtgtccgacaccgacatgacacctatgattacactaaattatatcattttttttaaattatcatccgt 23386148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 356 - 406
Target Start/End: Original strand, 28000672 - 28000723
Alignment:
Q  356 atgaaacacggacattcctcagattaggtgtgt-tcggtgtcagacacgtgt 406  Q
    ||||| |||||||| || ||||||||||||||| ||||||||||||||||||    
T  28000672 atgaagcacggacactcatcagattaggtgtgtctcggtgtcagacacgtgt 28000723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 416 - 471
Target Start/End: Original strand, 31243545 - 31243600
Alignment:
Q  416 acaccgacatgaaatctatgattatactaaaatatgtcattttcttaaattattat 471  Q
    |||||||||||| | ||||||||| ||| || ||||||||||||| ||||||||||    
T  31243545 acaccgacatgacacctatgattacactgaattatgtcattttctcaaattattat 31243600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 448 - 503
Target Start/End: Complemental strand, 32910581 - 32910526
Alignment:
Q  448 tatgtcattttcttaaattattatccgtgtttgtgtgtcagtgtccgtgcttcata 503  Q
    ||||||||||||| ||||||||||||||||  || |||| |||| |||||||||||    
T  32910581 tatgtcattttctcaaattattatccgtgtcggtatgtcggtgttcgtgcttcata 32910526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 432 - 471
Target Start/End: Original strand, 55941016 - 55941055
Alignment:
Q  432 tatgattatactaaaatatgtcattttcttaaattattat 471  Q
    ||||||||||||||| ||||| ||||||||||||||||||    
T  55941016 tatgattatactaaattatgtaattttcttaaattattat 55941055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 3e-19; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 354 - 483
Target Start/End: Original strand, 42004882 - 42005011
Alignment:
Q  354 ctatgaaacacggacattcctcagattaggtgtgttcggtgtcagacacgtgttggtgtccgacaccgacatgaaatctatgattatactaaaatatgtc 453  Q
    ||||||| |||||||| || ||  |||||| |||||  ||||| |||| | || |||||||||||||||||  | | ||||||||| |||||| ||||||    
T  42004882 ctatgaagcacggacactcttcgaattaggcgtgtttagtgtcggacatgcgtcggtgtccgacaccgacacaacacctatgattacactaaattatgtc 42004981  T
Q  454 attttcttaaattattatccgtgtttgtgt 483  Q
    ||||||| |||||||||||||||| |||||    
T  42004982 attttctcaaattattatccgtgtctgtgt 42005011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 352 - 496
Target Start/End: Original strand, 6936332 - 6936477
Alignment:
Q  352 atctatgaaacacggacattcctcagattaggtgtgttc-ggtgtcagacacgtgttggtgtccgacaccgacatgaaatctatgattatactaaaatat 450  Q
    ||||||||| || ||||| ||||| ||||| | || ||| |||||| || | | || |||||||||||| |||| || | ||||||||| ||| || |||    
T  6936332 atctatgaagcatggacactcctcggattaagggtattctggtgtcggatatgcgtcggtgtccgacacagacacgacacctatgattacacttaattat 6936431  T
Q  451 gtcattttcttaaattattatccgtgtttgtgtgtcagtgtccgtg 496  Q
    |||||||||| | |||||||||||||||  ||||| ||||| ||||    
T  6936432 gtcattttctcagattattatccgtgttgatgtgttagtgttcgtg 6936477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 408 - 477
Target Start/End: Original strand, 40747762 - 40747831
Alignment:
Q  408 ggtgtccgacaccgacatgaaatctatgattatactaaaatatgtcattttcttaaattattatccgtgt 477  Q
    ||||||||||||| |||||| | |||| |||| | | || ||||||||||||| ||||||||||||||||    
T  40747762 ggtgtccgacaccaacatgacacctataattacattgaattatgtcattttctcaaattattatccgtgt 40747831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 406
Target Start/End: Complemental strand, 15323287 - 15323234
Alignment:
Q  354 ctatgaaacacggacattcctcagattaggtgtg-ttcggtgtcagacacgtgt 406  Q
    ||||||||||| |||| ||||| ||||||||||| ||||||||| |||||||||    
T  15323287 ctatgaaacactgacactcctcggattaggtgtgtttcggtgtcggacacgtgt 15323234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 424
Target Start/End: Original strand, 17831460 - 17831533
Alignment:
Q  352 atctatgaaacacggacattcctcagattaggtgtgt-tcggtgtcagacacgtgttggtgtccgacaccgaca 424  Q
    |||||||||||| ||||| |||| |||||||| ||||  ||||||| ||||| ||| |||||||||||| ||||    
T  17831460 atctatgaaacatggacactcctaagattaggcgtgtcccggtgtcggacacatgtcggtgtccgacactgaca 17831533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 436 - 504
Target Start/End: Original strand, 22515904 - 22515972
Alignment:
Q  436 attatactaaaatatgtcattttcttaaattattatccgtgtttgtgtgtcagtgtccgtgcttcatag 504  Q
    |||| |||||| ||||| ||||| | ||||||||| | |||| || ||||| |||||||||||||||||    
T  22515904 attacactaaattatgtgattttttcaaattattagctgtgtctgcgtgtccgtgtccgtgcttcatag 22515972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 1e-18; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 363 - 503
Target Start/End: Complemental strand, 43554636 - 43554493
Alignment:
Q  363 acggacattcctcagattaggtgtgttcggtgtcagacacgtgttggtgtccgacaccgacatgaaatctatgattatactaaaatatgtcattttctta 462  Q
    ||||||| | ||| ||||||| |||| | ||||| |||||| || ||||||||||||||||| || | ||||||||| |||||| ||| ||||||||| |    
T  43554636 acggacacttctcggattaggcgtgtcccgtgtcggacacgcgtcggtgtccgacaccgacacgacacctatgattacactaaattatatcattttctca 43554537  T
Q  463 aattattatccgtgt-ttgt--gtgtcagtgtccgtgcttcata 503  Q
    ||||||||| |||||  |||  ||||| ||||||||||||||||    
T  43554536 aattattatacgtgtcgtgtccgtgtctgtgtccgtgcttcata 43554493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 431 - 477
Target Start/End: Complemental strand, 42469268 - 42469222
Alignment:
Q  431 ctatgattatactaaaatatgtcattttcttaaattattatccgtgt 477  Q
    ||||||||| |||||||||||||||||||| ||||||||||||||||    
T  42469268 ctatgattacactaaaatatgtcattttctcaaattattatccgtgt 42469222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 130
Target Start/End: Complemental strand, 33277228 - 33277155
Alignment:
Q  57 cacattgctgcttatggagaaggaaatgagagacgtctcactggaaaacatgaaacagcagacatcaacacctt 130  Q
    ||||||||||||||||||||||| |||||| | ||| | ||||||   |||||||| || ||||||||||||||    
T  33277228 cacattgctgcttatggagaaggcaatgagcgtcgtttgactggacgtcatgaaactgctgacatcaacacctt 33277155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 390 - 460
Target Start/End: Original strand, 26205731 - 26205801
Alignment:
Q  390 cggtgtcagacacgtgttggtgtccgacaccgacatgaaatctatgattatactaaaatatgtcattttct 460  Q
    ||||||| || ||| |||||||||||||||| ||| || | ||||||||| ||| || |||||||||||||    
T  26205731 cggtgtcggatacgcgttggtgtccgacaccaacacgacacctatgattacactgaattatgtcattttct 26205801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 354 - 419
Target Start/End: Complemental strand, 30098456 - 30098391
Alignment:
Q  354 ctatgaaacacggacattcctcagattaggtgtgttc-ggtgtcagacacgtgttggtgtccgacac 419  Q
    ||||||| |||||||||||||| |||||||||||| | |||||| |||||||| | |||||||||||    
T  30098456 ctatgaagcacggacattcctcggattaggtgtgtcctggtgtctgacacgtg-tcgtgtccgacac 30098391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 432 - 477
Target Start/End: Original strand, 2577193 - 2577238
Alignment:
Q  432 tatgattatactaaaatatgtcattttcttaaattattatccgtgt 477  Q
    |||||||| |||||| ||||||||||||| ||||||||||| ||||    
T  2577193 tatgattacactaaattatgtcattttctcaaattattatcggtgt 2577238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 448 - 477
Target Start/End: Complemental strand, 18162085 - 18162056
Alignment:
Q  448 tatgtcattttcttaaattattatccgtgt 477  Q
    ||||||||||||||||||||||||||||||    
T  18162085 tatgtcattttcttaaattattatccgtgt 18162056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 421 - 477
Target Start/End: Original strand, 18288053 - 18288109
Alignment:
Q  421 gacatgaaatctatgattatactaaaatatgtcattttcttaaattattatccgtgt 477  Q
    ||||||| | ||||||||||||| |  || |||||||||| ||||||||||||||||    
T  18288053 gacatgacacctatgattatactgagttaagtcattttctcaaattattatccgtgt 18288109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 3e-16; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 376 - 496
Target Start/End: Original strand, 4017751 - 4017871
Alignment:
Q  376 agattaggtgtgttcggtgtcagacacgtgttggtgtccgacaccgacatgaaatctatgattatactaaaatatgtcattttcttaaattattatccgt 475  Q
    |||||||| |||||| |||||||||||  || ||||||||||||| ||| || |  |||||||| |||||| ||| || |||||| ||||||||||||||    
T  4017751 agattaggcgtgttccgtgtcagacacacgtcggtgtccgacaccaacacgacacttatgattacactaaattatatcgttttctcaaattattatccgt 4017850  T
Q  476 gtttgtgtgtcagtgtccgtg 496  Q
    ||  | ||||| |||||||||    
T  4017851 gtcggcgtgtcggtgtccgtg 4017871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 354 - 477
Target Start/End: Original strand, 7133212 - 7133336
Alignment:
Q  354 ctatgaaacacggacattcctcagattaggtgtgt-tcggtgtcagacacgtgttggtgtccgacaccgacatgaaatctatgattatactaaaatatgt 452  Q
    ||||||| |||||||  ||||||||||||||||||  | ||||| |||||| || |||||||||||||||||    | ||||||||| ||| || |||||    
T  7133212 ctatgaagcacggacgctcctcagattaggtgtgtcccagtgtcggacacgcgtcggtgtccgacaccgacacaccacctatgattacactgaattatgt 7133311  T
Q  453 cattttcttaaattattatccgtgt 477  Q
    |||||||| ||||||| ||| ||||    
T  7133312 cattttctcaaattatcatctgtgt 7133336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 371 - 473
Target Start/End: Complemental strand, 5938580 - 5938477
Alignment:
Q  371 tcctcagattaggtgtgttc-ggtgtcagacacgtgttggtgtccgacaccgacatgaaatctatgattatactaaaatatgtcattttcttaaattatt 469  Q
    |||||||||||||||||||| |||||| ||||||  | |||||| ||||||||||  | | |||| |||||||| || ||||| ||||| | ||||||||    
T  5938580 tcctcagattaggtgtgttccggtgtcggacacgcatcggtgtctgacaccgacacaacacctataattatactgaattatgttattttatcaaattatt 5938481  T
Q  470 atcc 473  Q
    ||||    
T  5938480 atcc 5938477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 429 - 477
Target Start/End: Complemental strand, 13427625 - 13427577
Alignment:
Q  429 atctatgattatactaaaatatgtcattttcttaaattattatccgtgt 477  Q
    |||||||||||||||||| ||||||||||| | |||||||| |||||||    
T  13427625 atctatgattatactaaattatgtcattttttcaaattattttccgtgt 13427577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 448 - 496
Target Start/End: Complemental strand, 43250023 - 43249975
Alignment:
Q  448 tatgtcattttcttaaattattatccgtgtttgtgtgtcagtgtccgtg 496  Q
    ||||||||||||| ||||||||||||||||  | |||||||||||||||    
T  43250023 tatgtcattttctcaaattattatccgtgtcggcgtgtcagtgtccgtg 43249975  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 390 - 477
Target Start/End: Complemental strand, 23930307 - 23930220
Alignment:
Q  390 cggtgtcagacacgtgttggtgtccgacaccgacatgaaatctatgattatactaaaatatgtcattttcttaaattattatccgtgt 477  Q
    ||||||| ||||||  | ||| |||||||||||||  | | ||||||||| ||| || ||||||||||||| |||||| |||||||||    
T  23930307 cggtgtcggacacgcatcggtatccgacaccgacacaacacctatgattacactgaattatgtcattttctcaaattactatccgtgt 23930220  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 413 - 471
Target Start/End: Original strand, 29812658 - 29812716
Alignment:
Q  413 ccgacaccgacatgaaatctatgattatactaaaatatgtcattttcttaaattattat 471  Q
    |||||||||||| || | ||||||||| |||||| ||| ||||||||| ||||||||||    
T  29812658 ccgacaccgacacgacacctatgattacactaaattatatcattttctcaaattattat 29812716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 427
Target Start/End: Original strand, 11665370 - 11665442
Alignment:
Q  355 tatgaaacacggacattcctcagattaggtgtg-ttcggtgtcagacacgtgttggtgtccgacaccgacatga 427  Q
    |||||| ||||||||||||||  ||||| |||| ||||||||| |||||||| | |||| ||||||||||||||    
T  11665370 tatgaagcacggacattcctcgtattagatgtgtttcggtgtcggacacgtg-tcgtgttcgacaccgacatga 11665442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 477
Target Start/End: Original strand, 38804544 - 38804613
Alignment:
Q  408 ggtgtccgacaccgacatgaaatctatgattatactaaaatatgtcattttcttaaattattatccgtgt 477  Q
    ||||||||||||| ||| || | |||||||||  ||  | ||||||||||||| ||||||||||||||||    
T  38804544 ggtgtccgacaccaacacgacacctatgattaccctggattatgtcattttctgaaattattatccgtgt 38804613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 436 - 496
Target Start/End: Original strand, 11061093 - 11061153
Alignment:
Q  436 attatactaaaatatgtcattttcttaaattattatccgtgtttgtgtgtcagtgtccgtg 496  Q
    ||||||||||| ||||| ||||| | ||||||||| | ||||  |||||||||||||||||    
T  11061093 attatactaaattatgtgattttttcaaattattagctgtgtcggtgtgtcagtgtccgtg 11061153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 356 - 477
Target Start/End: Complemental strand, 2066 - 1950
Alignment:
Q  356 atgaaacacggacattcctcagattaggtgtgttc-ggtgtcagacacgtgttggtgtccgacaccgacatgaaatctatgattatactaaaatatgtca 454  Q
    ||||| ||||||||  | || |||||||||||| | ||||||||||| |||| ||||||||||||      || | ||||||||| ||||||||||||||    
T  2066 atgaagcacggacacccttcggattaggtgtgtgcaggtgtcagacatgtgtcggtgtccgacac------gacacctatgattacactaaaatatgtca 1973  T
Q  455 ttttcttaaattattatccgtgt 477  Q
    |||||  ||||||||||||||||    
T  1972 ttttcacaaattattatccgtgt 1950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 356 - 477
Target Start/End: Complemental strand, 1676829 - 1676713
Alignment:
Q  356 atgaaacacggacattcctcagattaggtgtgttc-ggtgtcagacacgtgttggtgtccgacaccgacatgaaatctatgattatactaaaatatgtca 454  Q
    ||||| ||||||||  | || |||||||||||| | ||||||||||| |||| ||||||||||||      || | ||||||||| ||||||||||||||    
T  1676829 atgaagcacggacacccttcggattaggtgtgtgcaggtgtcagacatgtgtcggtgtccgacac------gacacctatgattacactaaaatatgtca 1676736  T
Q  455 ttttcttaaattattatccgtgt 477  Q
    |||||  ||||||||||||||||    
T  1676735 ttttcacaaattattatccgtgt 1676713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 431 - 475
Target Start/End: Original strand, 35431152 - 35431196
Alignment:
Q  431 ctatgattatactaaaatatgtcattttcttaaattattatccgt 475  Q
    ||||||||| |||||||||||||||||||| ||||||||||||||    
T  35431152 ctatgattacactaaaatatgtcattttctcaaattattatccgt 35431196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 377 - 472
Target Start/End: Complemental strand, 8017587 - 8017492
Alignment:
Q  377 gattaggtgtgttcggtgtcagacacgtgttggtgtccgacaccgacatgaaatctatgattatactaaaatatgtcattttcttaaattattatc 472  Q
    ||||||| || |||||||||||| | |||| ||||||| |||| |||| || ||||||||||| ||| || ||||||||||| | | |||||||||    
T  8017587 gattaggggttttcggtgtcagataggtgtcggtgtccaacactgacacgacatctatgattacactcaattatgtcattttttcatattattatc 8017492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 377 - 471
Target Start/End: Original strand, 14513131 - 14513226
Alignment:
Q  377 gattaggtgtgttc-ggtgtcagacacgtgttggtgtccgacaccgacatgaaatctatgattatactaaaatatgtcattttcttaaattattat 471  Q
    |||||||||||||| |||||| |||| | || |||||| ||||||||||  |||||||||||||  || || ||||| ||||||| ||||||||||    
T  14513131 gattaggtgtgttccggtgtcggacatgcgtcggtgtctgacaccgacaccaaatctatgattacgctgaattatgtaattttctcaaattattat 14513226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 391 - 492
Target Start/End: Complemental strand, 22850431 - 22850330
Alignment:
Q  391 ggtgtcagacacgtgttggtgtccgacaccgacatgaaatctatgattatactaaaatatgtcattttcttaaattattatccgtgtttgtgtgtcagtg 490  Q
    |||||||||||||||  |||||| ||||  ||||||||| |||| |||| | | || |||||| |||||| ||||||| ||| ||||| ||||||| |||    
T  22850431 ggtgtcagacacgtgccggtgtcggacattgacatgaaacctataattacatttaattatgtctttttctcaaattatcatcggtgttagtgtgtcggtg 22850332  T
Q  491 tc 492  Q
    ||    
T  22850331 tc 22850330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 371 - 424
Target Start/End: Original strand, 14659652 - 14659706
Alignment:
Q  371 tcctcagattaggtgtgt-tcggtgtcagacacgtgttggtgtccgacaccgaca 424  Q
    |||||||||||||||||| |||||||  |||||| ||||||||| ||||||||||    
T  14659652 tcctcagattaggtgtgtctcggtgttggacacgcgttggtgtctgacaccgaca 14659706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 433 - 483
Target Start/End: Original strand, 16869729 - 16869779
Alignment:
Q  433 atgattatactaaaatatgtcattttcttaaattattatccgtgtttgtgt 483  Q
    ||||||||| | || |||||||||||||||||||||| |||||||| ||||    
T  16869729 atgattatagtgaattatgtcattttcttaaattattttccgtgttagtgt 16869779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 355 - 424
Target Start/End: Original strand, 24205749 - 24205818
Alignment:
Q  355 tatgaaacacggacattcctcagattaggtgtgtt-cggtgtcagacacgtgttggtgtccgacaccgaca 424  Q
    ||||||||||||||| ||||| ||||||| ||||| |||||||||||| | ||| |||| |||||||||||    
T  24205749 tatgaaacacggacactcctcggattaggcgtgttccggtgtcagacatgcgtt-gtgttcgacaccgaca 24205818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 435 - 477
Target Start/End: Original strand, 30068044 - 30068086
Alignment:
Q  435 gattatactaaaatatgtcattttcttaaattattatccgtgt 477  Q
    ||||||||| || ||||||||||||| ||||||||||||||||    
T  30068044 gattatactgaattatgtcattttctcaaattattatccgtgt 30068086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 448 - 492
Target Start/End: Complemental strand, 44067546 - 44067502
Alignment:
Q  448 tatgtcattttcttaaattattatccgtgtttgtgtgtcagtgtc 492  Q
    ||||||||||||| ||||||||||||||||  | |||||||||||    
T  44067546 tatgtcattttctcaaattattatccgtgtcggcgtgtcagtgtc 44067502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 355 - 477
Target Start/End: Original strand, 23354582 - 23354710
Alignment:
Q  355 tatgaaacacggacattcctcagattaggtgtgttcggtgtcagacacgtgttggtgtccga------caccgacatgaaatctatgattatactaaaat 448  Q
    |||||| |||||||| ||||| ||||||| |||| | |||||||||||  || |||||||||      |||||||| || | ||||||||| |||||| |    
T  23354582 tatgaaccacggacactcctcggattaggcgtgtcccgtgtcagacaccggtcggtgtccgaccccgacaccgacacgacacctatgattacactaaatt 23354681  T
Q  449 atgtcattttcttaaattattatccgtgt 477  Q
    || ||||||||| ||||||||||| ||||    
T  23354682 atatcattttctcaaattattatctgtgt 23354710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 356 - 477
Target Start/End: Original strand, 23354926 - 23355053
Alignment:
Q  356 atgaaacacggacattcctcagattaggtgtgttcggtgtcagacacgtgttggtgtcc------gacaccgacatgaaatctatgattatactaaaata 449  Q
    ||||| || ||||| ||||| ||||||| |||| | |||||||||||| || |||||||      ||||||||||||| | ||||||||  |||||| ||    
T  23354926 atgaagcaaggacactcctcggattaggcgtgtcccgtgtcagacacgggtcggtgtccaaccccgacaccgacatgacacctatgattgcactaaatta 23355025  T
Q  450 tgtcattttcttaaattattatccgtgt 477  Q
    | ||||||||| ||||||||||| ||||    
T  23355026 tatcattttctcaaattattatctgtgt 23355053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 392 - 492
Target Start/End: Complemental strand, 37986865 - 37986765
Alignment:
Q  392 gtgtcagacacgtgttggtgtccgacaccgacatgaaatctatgattatactaaaatatgtcattttcttaaattattatccgtgtttgtgtgtcagtgt 491  Q
    |||||||||||  || ||||||||||||| ||| || | ||||||||| ||| |||||| ||||||| | ||||||||||| ||||  | ||||||||||    
T  37986865 gtgtcagacactcgtcggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttttcaaattattatctgtgtcggcgtgtcagtgt 37986766  T
Q  492 c 492  Q
    |    
T  37986765 c 37986765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 433 - 477
Target Start/End: Complemental strand, 22085049 - 22085005
Alignment:
Q  433 atgattatactaaaatatgtcattttcttaaattattatccgtgt 477  Q
    ||||||| |||||| |||||||||||||||||||||||| |||||    
T  22085049 atgattacactaaattatgtcattttcttaaattattatacgtgt 22085005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 354 - 424
Target Start/End: Complemental strand, 35056998 - 35056928
Alignment:
Q  354 ctatgaaacacggacattcctcagattaggtgtg-ttcggtgtcagacacgtgttggtgtccgacaccgaca 424  Q
    ||||||| |||||||| ||||||||||||| ||| ||| ||||| |||||||| | ||||||||||||||||    
T  35056998 ctatgaagcacggacactcctcagattaggcgtgtttccgtgtcggacacgtg-tcgtgtccgacaccgaca 35056928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 431 - 472
Target Start/End: Complemental strand, 24011083 - 24011042
Alignment:
Q  431 ctatgattatactaaaatatgtcattttcttaaattattatc 472  Q
    ||||||||| |||||| ||||||||||||| |||||||||||    
T  24011083 ctatgattacactaaattatgtcattttctcaaattattatc 24011042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 409 - 477
Target Start/End: Complemental strand, 19574047 - 19573979
Alignment:
Q  409 gtgtccgacaccgacatgaaatctatgattatactaaaatatgtcattttcttaaattattatccgtgt 477  Q
    |||||||||||||||| |  | |||| |||| ||| || ||||| ||||||||||||||||||| ||||    
T  19574047 gtgtccgacaccgacacgccacctataattacactgaattatgttattttcttaaattattatcggtgt 19573979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 353 - 424
Target Start/End: Complemental strand, 35742 - 35670
Alignment:
Q  353 tctatgaaacacggacattcctcagattaggtgtgtt-cggtgtcagacacgtgttggtgtccgacaccgaca 424  Q
    |||||||| ||| |||| || ||||| |||||||||| |||||||||||||| ||||||||||||| ||||||    
T  35742 tctatgaagcacagacactcttcagagtaggtgtgtttcggtgtcagacacgcgttggtgtccgactccgaca 35670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 350 - 424
Target Start/End: Complemental strand, 8921 - 8847
Alignment:
Q  350 tgatctatgaaacacggacattcctcagattaggtgtgt-tcggtgtcagacacgtgttggtgtccgacaccgaca 424  Q
    ||||||||||| |||||| | ||||||||||||| |||| |||||||| |||||||| | ||||||||||||||||    
T  8921 tgatctatgaagcacggagactcctcagattaggcgtgtctcggtgtcggacacgtg-tcgtgtccgacaccgaca 8847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 448 - 496
Target Start/End: Original strand, 225297 - 225345
Alignment:
Q  448 tatgtcattttcttaaattattatccgtgtttgtgtgtcagtgtccgtg 496  Q
    ||||||||||||| ||||||||||| ||||  | |||||||||||||||    
T  225297 tatgtcattttctcaaattattatctgtgtcggcgtgtcagtgtccgtg 225345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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