View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16291_low_12 (Length: 264)

Name: NF16291_low_12
Description: NF16291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16291_low_12
NF16291_low_12
[»] chr4 (13 HSPs)
chr4 (18-161)||(7141596-7141738)
chr4 (162-260)||(8740404-8740502)
chr4 (162-260)||(46494476-46494574)
chr4 (162-264)||(39863852-39863954)
chr4 (162-264)||(36192498-36192599)
chr4 (162-264)||(51066449-51066551)
chr4 (162-263)||(50905704-50905805)
chr4 (162-258)||(7173665-7173761)
chr4 (170-264)||(2294784-2294878)
chr4 (168-264)||(32139126-32139222)
chr4 (186-243)||(51714060-51714117)
chr4 (186-260)||(30970462-30970536)
chr4 (162-201)||(51066205-51066244)
[»] chr7 (13 HSPs)
chr7 (156-264)||(35109641-35109749)
chr7 (162-264)||(38265311-38265413)
chr7 (162-264)||(16059427-16059529)
chr7 (162-260)||(21577176-21577274)
chr7 (162-264)||(34721790-34721892)
chr7 (162-264)||(18117018-18117120)
chr7 (173-264)||(41151139-41151230)
chr7 (162-260)||(11216725-11216823)
chr7 (161-263)||(38405229-38405331)
chr7 (165-243)||(45278411-45278489)
chr7 (165-260)||(48176359-48176453)
chr7 (200-264)||(12472115-12472179)
chr7 (162-216)||(40038621-40038675)
[»] chr3 (15 HSPs)
chr3 (162-264)||(7417754-7417856)
chr3 (162-264)||(8400811-8400913)
chr3 (161-260)||(35198720-35198819)
chr3 (162-264)||(22855843-22855945)
chr3 (162-260)||(48078019-48078117)
chr3 (162-263)||(34824512-34824613)
chr3 (171-260)||(55467964-55468053)
chr3 (189-264)||(50823681-50823756)
chr3 (189-264)||(50852104-50852179)
chr3 (162-242)||(52545277-52545357)
chr3 (177-260)||(43334132-43334215)
chr3 (162-223)||(39438934-39438995)
chr3 (191-264)||(50726071-50726144)
chr3 (191-264)||(50786704-50786777)
chr3 (180-264)||(42876189-42876273)
[»] chr8 (14 HSPs)
chr8 (162-264)||(19723267-19723369)
chr8 (162-264)||(4840096-4840198)
chr8 (162-260)||(27881066-27881164)
chr8 (162-260)||(28021247-28021345)
chr8 (162-260)||(22711465-22711563)
chr8 (163-245)||(28739654-28739736)
chr8 (162-264)||(32296713-32296815)
chr8 (162-245)||(11610236-11610319)
chr8 (162-260)||(11403957-11404055)
chr8 (161-260)||(24475074-24475173)
chr8 (162-245)||(30682795-30682878)
chr8 (187-243)||(29767169-29767225)
chr8 (163-226)||(6097521-6097584)
chr8 (162-245)||(41553244-41553324)
[»] chr2 (20 HSPs)
chr2 (162-264)||(6672867-6672969)
chr2 (162-264)||(40155996-40156098)
chr2 (162-260)||(2357153-2357251)
chr2 (162-264)||(44650349-44650451)
chr2 (162-259)||(7860225-7860322)
chr2 (162-263)||(10745307-10745408)
chr2 (162-260)||(2754129-2754227)
chr2 (162-264)||(25987736-25987838)
chr2 (162-264)||(5039376-5039478)
chr2 (162-260)||(17136343-17136441)
chr2 (162-264)||(26690110-26690212)
chr2 (156-260)||(30372758-30372862)
chr2 (162-262)||(36380208-36380308)
chr2 (188-264)||(36836403-36836479)
chr2 (178-260)||(21637869-21637951)
chr2 (199-264)||(45137044-45137109)
chr2 (162-225)||(2098953-2099016)
chr2 (171-264)||(3200847-3200939)
chr2 (162-226)||(13047263-13047324)
chr2 (162-207)||(21487106-21487151)
[»] chr1 (10 HSPs)
chr1 (162-264)||(30054516-30054618)
chr1 (162-264)||(20014414-20014516)
chr1 (161-245)||(15034410-15034494)
chr1 (162-264)||(30370134-30370236)
chr1 (162-264)||(12025137-12025239)
chr1 (162-260)||(45323962-45324060)
chr1 (165-260)||(21090074-21090169)
chr1 (186-260)||(4573359-4573433)
chr1 (162-264)||(33763328-33763430)
chr1 (168-216)||(35617942-35617990)
[»] chr6 (5 HSPs)
chr6 (165-260)||(14496311-14496406)
chr6 (162-260)||(35163828-35163926)
chr6 (162-260)||(2711812-2711910)
chr6 (168-264)||(19686901-19686997)
chr6 (162-261)||(14505600-14505698)
[»] scaffold0021 (1 HSPs)
scaffold0021 (162-264)||(107765-107867)
[»] chr5 (5 HSPs)
chr5 (162-260)||(17064279-17064377)
chr5 (162-241)||(20983100-20983179)
chr5 (162-243)||(35237118-35237199)
chr5 (190-243)||(37976530-37976583)
chr5 (173-214)||(41910793-41910834)
[»] scaffold0691 (1 HSPs)
scaffold0691 (162-264)||(7043-7141)


Alignment Details
Target: chr4 (Bit Score: 136; Significance: 5e-71; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 18 - 161
Target Start/End: Original strand, 7141596 - 7141738
Alignment:
Q  18 gttctcatgattcagttgagaaacagctaaatggcgacgtcaggtggcgttggtagcgggggatgcacgagagagaagagtgaggagagataaatttttg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  7141596 gttctcatgattcagttgagaaacagctaaatggcgacgtcaggtggcgttggtagcgggggatgcacgagagagaagagtgaggagagataaa-ttttg 7141694  T
Q  118 ttgtaaataaattttgtgaaggaaattaacttatatagttgtgg 161  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  7141695 ttgtaaataaattttgtgaaggaaattaacttatatagttgtgg 7141738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 162 - 260
Target Start/End: Original strand, 8740404 - 8740502
Alignment:
Q  162 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgaggcccactagtgcctttggatgtaggtacatgtaa 260  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||||| | ||||| ||||||    
T  8740404 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagatcccgggttcgagccccgctagtgcctttggagggaggtaaatgtaa 8740502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 162 - 260
Target Start/End: Complemental strand, 46494574 - 46494476
Alignment:
Q  162 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgaggcccactagtgcctttggatgtaggtacatgtaa 260  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||| ||||||    
T  46494574 aactccaaaggtttggtctagtggtaaaatgacaggtcttgaatccgagagaacccgggttcgagccccactagtgcctttggagggaggtaaatgtaa 46494476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 162 - 264
Target Start/End: Complemental strand, 39863954 - 39863852
Alignment:
Q  162 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgaggcccactagtgcctttggatgtaggtacatgtaat 261  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||| |||||||||||||| | | ||| |||||||    
T  39863954 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcggaccccgctagtgcctttggagggaagtaaatgtaat 39863855  T
Q  262 tac 264  Q
    |||    
T  39863854 tac 39863852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 162 - 264
Target Start/End: Original strand, 36192498 - 36192599
Alignment:
Q  162 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgaggcccactagtgcctttggatgtaggtacatgtaat 261  Q
    ||||||||||| || |||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| | ||||| |||||||    
T  36192498 aactccaaaggtttagtct-gtggtaaaaagacaggtcttgaattcgagagaacccgggttcgagccccactagtgcctttggagggaggtaaatgtaat 36192596  T
Q  262 tac 264  Q
    |||    
T  36192597 tac 36192599  T

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Target: chr4; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 162 - 264
Target Start/End: Original strand, 51066449 - 51066551
Alignment:
Q  162 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgaggcccactagtgcctttggatgtaggtacatgtaat 261  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||  || |||||||||||||| | ||||| || ||||    
T  51066449 aactccaaagacttggtctagtggtaaaaagacaggtcttgaatccgagagaactcgggttcgagctccgctagtgcctttggagggaggtaaatataat 51066548  T
Q  262 tac 264  Q
    |||    
T  51066549 tac 51066551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 162 - 263
Target Start/End: Original strand, 50905704 - 50905805
Alignment:
Q  162 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgaggcccactagtgcctttggatgtaggtacatgtaat 261  Q
    ||||||||||| || |||||||||||||||||||||||||||||||||||||| | ||||||||| ||| ||||||||||||||   ||||| |||||||    
T  50905704 aactccaaaggtttagtctagtggtaaaaagacaggtcttgaatccgagagaatctgggttcgagccccgctagtgcctttggagagaggtaaatgtaat 50905803  T
Q  262 ta 263  Q
    ||    
T  50905804 ta 50905805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 162 - 258
Target Start/End: Complemental strand, 7173761 - 7173665
Alignment:
Q  162 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgaggcccactagtgcctttggatgtaggtacatgt 258  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||  ||||| || ||| |||||||||||||| | ||||| ||||    
T  7173761 aactccaaaggcttggtctagtggtaaaatgacaggtcttgaatccgagagaacctaggttcaagacccgctagtgcctttggaaggaggtaaatgt 7173665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 170 - 264
Target Start/End: Complemental strand, 2294878 - 2294784
Alignment:
Q  170 aggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgaggcccactagtgcctttggatgtaggtacatgtaattac 264  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||   | |||||||||||||| | ||||| ||||||||||    
T  2294878 aggcttggtctagtggtaaaaagacaggtcttgaattcgagagaactcgggttcgagtttcgctagtgcctttggaggaaggtaaatgtaattac 2294784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 168 - 264
Target Start/End: Original strand, 32139126 - 32139222
Alignment:
Q  168 aaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgaggcccactagtgcctttggatgtaggtacatgtaattac 264  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||  ||| |||||| ||||||| | ||||| ||||||||||    
T  32139126 aaaggcttggtctagtggtaaaaggacaggtcatgaatccgagagaacctgggttcgaaccccgctagtgtctttggagggaggtaaatgtaattac 32139222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 186 - 243
Target Start/End: Complemental strand, 51714117 - 51714060
Alignment:
Q  186 taaaaagacaggtcttgaatccgagagaacccgggttcgaggcccactagtgcctttg 243  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  51714117 taaaatgacaggtcttgaatccgagagaacccgggttcgagccccactagtgcctttg 51714060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 186 - 260
Target Start/End: Complemental strand, 30970536 - 30970462
Alignment:
Q  186 taaaaagacaggtcttgaatccgagagaacccgggttcgaggcccactagtgcctttggatgtaggtacatgtaa 260  Q
    ||||| ||||||||||||||||||||||| ||||||||||| | |||||||||||||| | | ||||| ||||||    
T  30970536 taaaatgacaggtcttgaatccgagagaatccgggttcgagcctcactagtgcctttgaagggaggtaaatgtaa 30970462  T

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Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 162 - 201
Target Start/End: Original strand, 51066205 - 51066244
Alignment:
Q  162 aactccaaaggcttggtctagtggtaaaaagacaggtctt 201  Q
    |||||||||| ||||||||||||||||||||||| |||||    
T  51066205 aactccaaagacttggtctagtggtaaaaagacaagtctt 51066244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 93; Significance: 2e-45; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 156 - 264
Target Start/End: Original strand, 35109641 - 35109749
Alignment:
Q  156 ttgtggaactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgaggcccactagtgcctttggatgtaggtaca 255  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||| |    
T  35109641 ttgtggaactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagccccactagtgcctttggagggaggtaaa 35109740  T
Q  256 tgtaattac 264  Q
    |||||||||    
T  35109741 tgtaattac 35109749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 162 - 264
Target Start/End: Complemental strand, 38265413 - 38265311
Alignment:
Q  162 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgaggcccactagtgcctttggatgtaggtacatgtaat 261  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||| | ||||| |||||||    
T  38265413 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacctgggttcgagccccgctagtgcctttggagggaggtaaatgtaat 38265314  T
Q  262 tac 264  Q
    |||    
T  38265313 tac 38265311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 162 - 264
Target Start/End: Complemental strand, 16059529 - 16059427
Alignment:
Q  162 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgaggcccactagtgcctttggatgtaggtacatgtaat 261  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| | | ||||| |||||||    
T  16059529 aactccaaaggcttggactagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagccccgctagtgcctttgcagggaggtaaatgtaat 16059430  T
Q  262 tac 264  Q
    |||    
T  16059429 tac 16059427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 162 - 260
Target Start/End: Complemental strand, 21577274 - 21577176
Alignment:
Q  162 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgaggcccactagtgcctttggatgtaggtacatgtaa 260  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| | ||||| ||||||    
T  21577274 aacttcaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagccccactaatgcctttggagggaggtaaatgtaa 21577176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 162 - 264
Target Start/End: Original strand, 34721790 - 34721892
Alignment:
Q  162 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgaggcccactagtgcctttggatgtaggtacatgtaat 261  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||| |||||||||||||| | ||||| |||||||    
T  34721790 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccggattcaagccccgctagtgcctttggagggaggtaaatgtaat 34721889  T
Q  262 tac 264  Q
    |||    
T  34721890 tac 34721892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 162 - 264
Target Start/End: Complemental strand, 18117120 - 18117018
Alignment:
Q  162 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgaggcccactagtgcctttggatgtaggtacatgtaat 261  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||| || | ||||| |||||||    
T  18117120 aactccaaaggcttgttctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagccacgctagtgcctttagagggaggtaaatgtaat 18117021  T
Q  262 tac 264  Q
    |||    
T  18117020 tac 18117018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 173 - 264
Target Start/End: Original strand, 41151139 - 41151230
Alignment:
Q  173 cttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgaggcccactagtgcctttggatgtaggtacatgtaattac 264  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| ||||||| | ||||| ||||||||||    
T  41151139 cttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagccccgctagtgtctttggagggaggtaaatgtaattac 41151230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 162 - 260
Target Start/End: Original strand, 11216725 - 11216823
Alignment:
Q  162 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgaggcccactagtgcctttggatgtaggtacatgtaa 260  Q
    ||||||||||| ||||||||||||||||  ||||||||||||||| ||||||||||||||||||| |||| ||||||||||||| | ||||| ||||||    
T  11216725 aactccaaaggtttggtctagtggtaaagtgacaggtcttgaatctgagagaacccgggttcgagccccattagtgcctttggagggaggtaaatgtaa 11216823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 161 - 263
Target Start/End: Complemental strand, 38405331 - 38405229
Alignment:
Q  161 gaactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgaggcccactagtgcctttggatgtaggtacatgtaa 260  Q
    ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||  || ||||||| | | |||||||||||||| | ||||| ||||||    
T  38405331 gaacttcaaaggcttcgtctagtggtaaaaagacaggtcttgaatccgagagaattcgagttcgagcctcgctagtgcctttggagggaggtaaatgtaa 38405232  T
Q  261 tta 263  Q
    |||    
T  38405231 tta 38405229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 165 - 243
Target Start/End: Original strand, 45278411 - 45278489
Alignment:
Q  165 tccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgaggcccactagtgcctttg 243  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||| ||||||||||||    
T  45278411 tccaaagtcttggtctagtggtaaaaagataggtcttgaatccgagataacccgggttcgagccccgctagtgcctttg 45278489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 165 - 260
Target Start/End: Original strand, 48176359 - 48176453
Alignment:
Q  165 tccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgaggcccactagtgcctttggatgtaggtacatgtaa 260  Q
    ||||||||||||||||| |||||||||||||| |||| |||||||||||| ||||||||||| ||| |||||||||||||| | ||||| ||||||    
T  48176359 tccaaaggcttggtcta-tggtaaaaagacagatcttaaatccgagagaatccgggttcgagccccgctagtgcctttggaaggaggtaaatgtaa 48176453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 200 - 264
Target Start/End: Original strand, 12472115 - 12472179
Alignment:
Q  200 ttgaatccgagagaacccgggttcgaggcccactagtgcctttggatgtaggtacatgtaattac 264  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| | ||||| || |||||||    
T  12472115 ttgaatccgagagaacccgggttcgagccccactagtgcctttggagggaggtaaatataattac 12472179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 162 - 216
Target Start/End: Original strand, 40038621 - 40038675
Alignment:
Q  162 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacc 216  Q
    |||||||||| |||| ||||||||||||||||||||||||||||| |||||||||    
T  40038621 aactccaaagacttgatctagtggtaaaaagacaggtcttgaatctgagagaacc 40038675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 162 - 264
Target Start/End: Original strand, 7417754 - 7417856
Alignment:
Q  162 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgaggcccactagtgcctttggatgtaggtacatgtaat 261  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| | ||||| |||||||    
T  7417754 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaat 7417853  T
Q  262 tac 264  Q
    |||    
T  7417854 tac 7417856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 162 - 264
Target Start/End: Original strand, 8400811 - 8400913
Alignment:
Q  162 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgaggcccactagtgcctttggatgtaggtacatgtaat 261  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| | ||||| |||||||    
T  8400811 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaat 8400910  T
Q  262 tac 264  Q
    |||    
T  8400911 tac 8400913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 161 - 260
Target Start/End: Original strand, 35198720 - 35198819
Alignment:
Q  161 gaactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgaggcccactagtgcctttggatgtaggtacatgtaa 260  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| | | ||||| ||||||    
T  35198720 gaacttcaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagccccactaatgcctttgcagggaggtaaatgtaa 35198819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 162 - 264
Target Start/End: Original strand, 22855843 - 22855945
Alignment:
Q  162 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgaggcccactagtgcctttggatgtaggtacatgtaat 261  Q
    ||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||| |||||||| ||| |||||| ||||||| | ||||| |||||||    
T  22855843 aactccaaaggtttggtctagtggtaaaaagacaggtcttaaattcgagagaacccaggttcgagccccgctagtgtctttggagggaggtaaatgtaat 22855942  T
Q  262 tac 264  Q
    |||    
T  22855943 tac 22855945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 162 - 260
Target Start/End: Complemental strand, 48078117 - 48078019
Alignment:
Q  162 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgaggcccactagtgcctttggatgtaggtacatgtaa 260  Q
    |||| |||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||| | |||||||||||||||| | ||||| ||||||    
T  48078117 aacttcaaaggcttggtctagtggtaaaatgacaggtcttgaattcgagagaactcgggttcgagcctcactagtgcctttggaggaaggtaaatgtaa 48078019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 162 - 263
Target Start/End: Original strand, 34824512 - 34824613
Alignment:
Q  162 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgaggcccactagtgcctttggatgtaggtacatgtaat 261  Q
    ||||||||||  |||||||||||||||||||| || ||||||||||||||||||| | ||||||| |||  ||||||||||| | | ||||| |||||||    
T  34824512 aactccaaagatttggtctagtggtaaaaagatagatcttgaatccgagagaacctgagttcgagtcccgttagtgcctttgaagggaggtaaatgtaat 34824611  T
Q  262 ta 263  Q
    ||    
T  34824612 ta 34824613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 171 - 260
Target Start/End: Original strand, 55467964 - 55468053
Alignment:
Q  171 ggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgaggcccactagtgcctttggatgtaggtacatgtaa 260  Q
    |||||||||||||||||||| |||| ||||||||| |||||||| ||||||||||| ||||||| ||| |||||| | ||||| ||||||    
T  55467964 ggcttggtctagtggtaaaatgacatgtcttgaattcgagagaatccgggttcgagccccactaatgcgtttggagggaggtaaatgtaa 55468053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 189 - 264
Target Start/End: Original strand, 50823681 - 50823756
Alignment:
Q  189 aaagacaggtcttgaatccgagagaacccgggttcgaggcccactagtgcctttggatgtaggtacatgtaattac 264  Q
    ||||||| |||||||||||||||||| ||||||||||| |||  ||||||||||||| | ||||| ||||||||||    
T  50823681 aaagacaagtcttgaatccgagagaatccgggttcgagtcccgttagtgcctttggagggaggtaaatgtaattac 50823756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 189 - 264
Target Start/End: Complemental strand, 50852179 - 50852104
Alignment:
Q  189 aaagacaggtcttgaatccgagagaacccgggttcgaggcccactagtgcctttggatgtaggtacatgtaattac 264  Q
    ||||||| |||||||||||||||||| ||||||||||| |||  ||||||||||||| | ||||| ||||||||||    
T  50852179 aaagacaagtcttgaatccgagagaatccgggttcgagtcccgttagtgcctttggagggaggtaaatgtaattac 50852104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 162 - 242
Target Start/End: Original strand, 52545277 - 52545357
Alignment:
Q  162 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgaggcccactagtgccttt 242  Q
    ||||| ||||| ||||||| ||| ||||| |||||||||||||||||||| ||  |||||||||| ||| |||||||||||    
T  52545277 aactcgaaaggtttggtctggtgataaaatgacaggtcttgaatccgagaaaattcgggttcgagccccgctagtgccttt 52545357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 260
Target Start/End: Complemental strand, 43334215 - 43334132
Alignment:
Q  177 gtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgaggcccactagtgcctttggatgtaggtacatgtaa 260  Q
    |||||| ||||||| |||| || ||||||||||||||||||| ||||||| ||| |||||| ||| ||| | ||||| ||||||    
T  43334215 gtctagaggtaaaatgacaagttttgaatccgagagaacccgagttcgagccccgctagtgtcttgggagggaggtaaatgtaa 43334132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 223
Target Start/End: Complemental strand, 39438995 - 39438934
Alignment:
Q  162 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttc 223  Q
    |||| |||||||||| | ||||| ||||||||||| ||||||||||||||||| || |||||    
T  39438995 aacttcaaaggcttgctatagtgttaaaaagacagatcttgaatccgagagaatccaggttc 39438934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 264
Target Start/End: Complemental strand, 50726144 - 50726071
Alignment:
Q  191 agacaggtcttgaatccgagagaacccgggttcgaggcccactagtgcctttggatgtaggtacatgtaattac 264  Q
    ||||||||||||||||||||||||  |||||||||| |||  ||||| ||||||| | ||||| || |||||||    
T  50726144 agacaggtcttgaatccgagagaattcgggttcgagccccgttagtgtctttggaggaaggtaaatataattac 50726071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 264
Target Start/End: Original strand, 50786704 - 50786777
Alignment:
Q  191 agacaggtcttgaatccgagagaacccgggttcgaggcccactagtgcctttggatgtaggtacatgtaattac 264  Q
    ||||||||||||||||||||||||  |||||||||| |||  ||||| ||||||| | ||||| || |||||||    
T  50786704 agacaggtcttgaatccgagagaattcgggttcgagccccgttagtgtctttggaggaaggtaaatataattac 50786777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 264
Target Start/End: Original strand, 42876189 - 42876273
Alignment:
Q  180 tagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgaggcccactagtgcctttggatgtaggtacatgtaattac 264  Q
    |||||||||||||| || ||||| || |||| || | || ||||||| || ||||||| |||| |||| ||||| ||||||||||    
T  42876189 tagtggtaaaaagatagatcttgtattcgagggatctcgagttcgagcccgactagtgtctttagatggaggtaaatgtaattac 42876273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 5e-37; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 162 - 264
Target Start/End: Original strand, 19723267 - 19723369
Alignment:
Q  162 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgaggcccactagtgcctttggatgtaggtacatgtaat 261  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| | ||||| |||||||    
T  19723267 aactccaaaggtttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaat 19723366  T
Q  262 tac 264  Q
    |||    
T  19723367 tac 19723369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 162 - 264
Target Start/End: Original strand, 4840096 - 4840198
Alignment:
Q  162 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgaggcccactagtgcctttggatgtaggtacatgtaat 261  Q
    |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||| |||||||||||||| | ||||| |||| ||    
T  4840096 aactccaaaggcttggtctagtggtaaaaagataggttttgaatccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtcat 4840195  T
Q  262 tac 264  Q
    |||    
T  4840196 tac 4840198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 162 - 260
Target Start/End: Complemental strand, 27881164 - 27881066
Alignment:
Q  162 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgaggcccactagtgcctttggatgtaggtacatgtaa 260  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||| |||||||||||| | | ||||| ||||||    
T  27881164 aactccaaaggcttggtctagtggtaaaatgacaggtcttgaatctgagagaacccgggttcgagccccgctagtgcctttgaagggaggtaaatgtaa 27881066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 162 - 260
Target Start/End: Complemental strand, 28021345 - 28021247
Alignment:
Q  162 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgaggcccactagtgcctttggatgtaggtacatgtaa 260  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||| |||||||||||| | | ||||| ||||||    
T  28021345 aactccaaaggcttggtctagtggtaaaatgacaggtcttgaatctgagagaacccgggttcgagccccgctagtgcctttgaagggaggtaaatgtaa 28021247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 162 - 260
Target Start/End: Original strand, 22711465 - 22711563
Alignment:
Q  162 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgaggcccactagtgcctttggatgtaggtacatgtaa 260  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| ||| || |||| |||||||||| | ||||| ||||||    
T  22711465 aactccaaaggtttggtctagtggtaaaaagacaggtcttgaatccgagagaactcgggtttgagtccaactaatgcctttggagggaggtaaatgtaa 22711563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 163 - 245
Target Start/End: Complemental strand, 28739736 - 28739654
Alignment:
Q  163 actccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgaggcccactagtgcctttgga 245  Q
    |||||||||||||||||||||||||||| |||||||||||||| | |||||||| |||||| || ||||||||||||||||||    
T  28739736 actccaaaggcttggtctagtggtaaaatgacaggtcttgaattctagagaacctgggttcaagccccactagtgcctttgga 28739654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 162 - 264
Target Start/End: Complemental strand, 32296815 - 32296713
Alignment:
Q  162 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgaggcccactagtgcctttggatgtaggtacatgtaat 261  Q
    ||||||||||| ||||||||||||||||||||||||||||||||  |||||||||||||||| || ||  |||||||||||| | | ||||| |||||||    
T  32296815 aactccaaaggtttggtctagtggtaaaaagacaggtcttgaatttgagagaacccgggttcaagccctgctagtgcctttgaagggaggtaaatgtaat 32296716  T
Q  262 tac 264  Q
    |||    
T  32296715 tac 32296713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 162 - 245
Target Start/End: Original strand, 11610236 - 11610319
Alignment:
Q  162 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgaggcccactagtgcctttgga 245  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||| | ||| |||||| | | ||||||||||||||    
T  11610236 aactccaaaggtttggtctagtggtaaaaagacaggtcttgaatccgagagatctcggattcgagcctcgctagtgcctttgga 11610319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 162 - 260
Target Start/End: Original strand, 11403957 - 11404055
Alignment:
Q  162 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgaggcccactagtgcctttggatgtaggtacatgtaa 260  Q
    |||||||||| |||||||||||||||||| |||||||||||||| |||||||||| ||||||||| | | |||||| ||||||| | ||||| ||||||    
T  11403957 aactccaaagacttggtctagtggtaaaatgacaggtcttgaattcgagagaacctgggttcgagcctcgctagtgtctttggagggaggtaaatgtaa 11404055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 161 - 260
Target Start/End: Complemental strand, 24475173 - 24475074
Alignment:
Q  161 gaactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgaggcccactagtgcctttggatgtaggtacatgtaa 260  Q
    ||||||||||||||||||||||| |||| | |||||||||||||||||| ||||  ||  ||||||  || |||||||||||||| | ||||| ||||||    
T  24475173 gaactccaaaggcttggtctagtagtaagatgacaggtcttgaatccgatagaattcgaattcgagctccgctagtgcctttggagggaggtaaatgtaa 24475074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 162 - 245
Target Start/End: Original strand, 30682795 - 30682878
Alignment:
Q  162 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgaggcccactagtgcctttgga 245  Q
    |||||||||||||||||||||||||| || | ||| |||||||| | ||||| |||| ||||||| |||||| |||||||||||    
T  30682795 aactccaaaggcttggtctagtggtacaatggcagttcttgaattcaagagagcccgtgttcgagccccactggtgcctttgga 30682878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 187 - 243
Target Start/End: Original strand, 29767169 - 29767225
Alignment:
Q  187 aaaaagacaggtcttgaatccgagagaacccgggttcgaggcccactagtgcctttg 243  Q
    |||||||||||||||||||| ||||||||||||| ||||| ||| ||||||||||||    
T  29767169 aaaaagacaggtcttgaatctgagagaacccggggtcgagccccgctagtgcctttg 29767225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 163 - 226
Target Start/End: Original strand, 6097521 - 6097584
Alignment:
Q  163 actccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgag 226  Q
    |||||||| |||||||||  ||||||||||||||||||||||| |||||||| ||| |||||||    
T  6097521 actccaaaagcttggtcttatggtaaaaagacaggtcttgaattcgagagaatccgagttcgag 6097584  T

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Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 162 - 245
Target Start/End: Original strand, 41553244 - 41553324
Alignment:
Q  162 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgaggcccactagtgcctttgga 245  Q
    ||||||||||||||| |   ||||||||| || ||||||||||| |||||||||||| ||||||| ||||||| || |||||||    
T  41553244 aactccaaaggcttgat---gtggtaaaatgataggtcttgaattcgagagaacccgagttcgagtcccactaatgtctttgga 41553324  T

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Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 162 - 264
Target Start/End: Complemental strand, 6672969 - 6672867
Alignment:
Q  162 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgaggcccactagtgcctttggatgtaggtacatgtaat 261  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||||| | ||||| |||||||    
T  6672969 aactccaaaggtttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcaagccccgctagtgcctttggagggaggtaaatgtaat 6672870  T
Q  262 tac 264  Q
    |||    
T  6672869 tac 6672867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 162 - 264
Target Start/End: Original strand, 40155996 - 40156098
Alignment:
Q  162 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgaggcccactagtgcctttggatgtaggtacatgtaat 261  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||| | ||||| |||||||    
T  40155996 aactccaaaggtttggtctagtggtaaaaagacaggtcttgaatccgagagaatccgggttcgagccccgctagtgcctttggagggaggtaaatgtaat 40156095  T
Q  262 tac 264  Q
    |||    
T  40156096 tac 40156098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 162 - 260
Target Start/End: Complemental strand, 2357251 - 2357153
Alignment:
Q  162 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgaggcccactagtgcctttggatgtaggtacatgtaa 260  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||  |||||||| |||||||| | ||||| ||||||    
T  2357251 aactccaaaggcttggtctagtggtaaaatgacaggtcttgaatccgagagaacccgggttcgagttccactagtacctttggagggaggtaaatgtaa 2357153  T

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Target: chr2; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 162 - 264
Target Start/End: Original strand, 44650349 - 44650451
Alignment:
Q  162 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgaggcccactagtgcctttggatgtaggtacatgtaat 261  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||  ||  ||||||||||||| | ||||| |||||||    
T  44650349 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgatttcgagctccgttagtgcctttggagggaggtaaatgtaat 44650448  T
Q  262 tac 264  Q
    |||    
T  44650449 tac 44650451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 162 - 259
Target Start/End: Complemental strand, 7860322 - 7860225
Alignment:
Q  162 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgaggcccactagtgcctttggatgtaggtacatgta 259  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||| ||| |||||||||||||| | ||||| |||||    
T  7860322 aactccaaaggcttggtctagtggtaaaatgacaggtcttgaatccgagagaacctgggtttgagccccgctagtgcctttggagggaggtaaatgta 7860225  T

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Target: chr2; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 162 - 263
Target Start/End: Complemental strand, 10745408 - 10745307
Alignment:
Q  162 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgaggcccactagtgcctttggatgtaggtacatgtaat 261  Q
    ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||| ||| ||||||||||| || | ||||| |||||||    
T  10745408 aactccaaaggcttggtttagtggtaaaaagacaggtcttgaattcgagagaacccgggtccgagccccgctagtgcctttagagggaggtaaatgtaat 10745309  T
Q  262 ta 263  Q
    ||    
T  10745308 ta 10745307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 162 - 260
Target Start/End: Complemental strand, 2754227 - 2754129
Alignment:
Q  162 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgaggcccactagtgcctttggatgtaggtacatgtaa 260  Q
    |||| |||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||||| ||||||| |||||||||| | ||||| ||||||    
T  2754227 aacttcaaaggcttggtttagtggtaaaatgacaggtcttgaatccgagagaacccggattcgagtcccactaatgcctttggagggaggtaaatgtaa 2754129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 162 - 264
Target Start/End: Complemental strand, 25987838 - 25987736
Alignment:
Q  162 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgaggcccactagtgcctttggatgtaggtacatgtaat 261  Q
    ||||||||||||||| |  | ||||||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||| | ||||| |||||||    
T  25987838 aactccaaaggcttgatacaatggtaaaaagacaggtcttgaatccgagagaactcgggttcgagccccgctagtgcctttggagggaggtaaatgtaat 25987739  T
Q  262 tac 264  Q
    |||    
T  25987738 tac 25987736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 162 - 264
Target Start/End: Original strand, 5039376 - 5039478
Alignment:
Q  162 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgaggcccactagtgcctttggatgtaggtacatgtaat 261  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||  || ||||||| ||| || | ||||| | |||||    
T  5039376 aactccaaaggcttggtatagtggtaaaaagacaggtcttgaatccgagagaactcgggttcgagctccgctagtgcttttagagggaggtaaacgtaat 5039475  T
Q  262 tac 264  Q
    |||    
T  5039476 tac 5039478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 162 - 260
Target Start/End: Original strand, 17136343 - 17136441
Alignment:
Q  162 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgaggcccactagtgcctttggatgtaggtacatgtaa 260  Q
    ||||||||||||||||||||||| ||||| ||||||| ||||||| ||||||||||||||||||| |||  ||||||||||||| | ||||| ||||||    
T  17136343 aactccaaaggcttggtctagtgataaaatgacaggttttgaatctgagagaacccgggttcgagccccgttagtgcctttggagggaggtaaatgtaa 17136441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 162 - 264
Target Start/End: Original strand, 26690110 - 26690212
Alignment:
Q  162 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgaggcccactagtgcctttggatgtaggtacatgtaat 261  Q
    ||||||||||||||||||||||||||||||||||||| || ||| |||||||| | ||||||||| ||| ||||||| |||||| | ||||| |||||||    
T  26690110 aactccaaaggcttggtctagtggtaaaaagacaggttttaaattcgagagaatctgggttcgagtcccgctagtgcttttggagggaggtaaatgtaat 26690209  T
Q  262 tac 264  Q
    |||    
T  26690210 tac 26690212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 156 - 260
Target Start/End: Complemental strand, 30372862 - 30372758
Alignment:
Q  156 ttgtggaactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgaggcccactagtgcctttggatgtaggtaca 255  Q
    |||| |||||||||||| |||||||||||||||||||| ||||||||||| ||||||| || |||||||||  || |||||||||||||| | ||||| |    
T  30372862 ttgtagaactccaaaggtttggtctagtggtaaaaagataggtcttgaattcgagagatcctgggttcgagctccgctagtgcctttggaaggaggtaaa 30372763  T
Q  256 tgtaa 260  Q
    |||||    
T  30372762 tgtaa 30372758  T

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Target: chr2; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 162 - 262
Target Start/End: Complemental strand, 36380308 - 36380208
Alignment:
Q  162 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgaggcccactagtgcctttggatgtaggtacatgtaat 261  Q
    |||| ||||||||||||||||||||||| ||||||||||||||| ||||| ||| |||||| ||  ||| |||||||||||||| | ||||| |||||||    
T  36380308 aacttcaaaggcttggtctagtggtaaacagacaggtcttgaattcgagaaaactcgggtttgaaccccgctagtgcctttggagggaggtaaatgtaat 36380209  T
Q  262 t 262  Q
    |    
T  36380208 t 36380208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 188 - 264
Target Start/End: Complemental strand, 36836479 - 36836403
Alignment:
Q  188 aaaagacaggtcttgaatccgagagaacccgggttcgaggcccactagtgcctttggatgtaggtacatgtaattac 264  Q
    ||||||||||||||||||||||||||||||| ||||||| ||| || ||||||||||| | ||||| ||||||||||    
T  36836479 aaaagacaggtcttgaatccgagagaacccgagttcgagtcccgctggtgcctttggagggaggtaaatgtaattac 36836403  T

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Target: chr2; HSP #15
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 178 - 260
Target Start/End: Original strand, 21637869 - 21637951
Alignment:
Q  178 tctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgaggcccactagtgcctttggatgtaggtacatgtaa 260  Q
    ||||||||||||| || ||||||||||| |||||||||||||||| ||| ||| |||||||||||||| | ||||| ||||||    
T  21637869 tctagtggtaaaatgataggtcttgaattcgagagaacccgggtttgagccccgctagtgcctttggagggaggtaaatgtaa 21637951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 199 - 264
Target Start/End: Complemental strand, 45137109 - 45137044
Alignment:
Q  199 cttgaatccgagagaacccgggttcgaggcccactagtgcctttggatgtaggtacatgtaattac 264  Q
    |||||||||||||||||||||||||||| ||| |||||||||||||| | ||||| ||||||||||    
T  45137109 cttgaatccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattac 45137044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 162 - 225
Target Start/End: Complemental strand, 2099016 - 2098953
Alignment:
Q  162 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcga 225  Q
    |||||||||||||||||||| |||||||| || ||||||||||| ||||||||||| |||||||    
T  2099016 aactccaaaggcttggtctattggtaaaatgataggtcttgaattcgagagaacccaggttcga 2098953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 171 - 264
Target Start/End: Original strand, 3200847 - 3200939
Alignment:
Q  171 ggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgaggcccactagtgcctttggatgtaggtacatgtaattac 264  Q
    |||||||||| ||||||||||||||| |||||||||  |||||||| || |||||| | | |||||||||||||| | ||||| ||||||||||    
T  3200847 ggcttggtct-gtggtaaaaagacagatcttgaatctaagagaacctggattcgagcctcgctagtgcctttggagggaggtaaatgtaattac 3200939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 162 - 226
Target Start/End: Complemental strand, 13047324 - 13047263
Alignment:
Q  162 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgag 226  Q
    ||||| |||||||||||||   |||||||||||||||||||||| |||||||| |||||||||||    
T  13047324 aactctaaaggcttggtct---ggtaaaaagacaggtcttgaattcgagagaatccgggttcgag 13047263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 207
Target Start/End: Original strand, 21487106 - 21487151
Alignment:
Q  162 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatcc 207  Q
    ||||||||||| || ||| |||||||||| ||||||||||||||||    
T  21487106 aactccaaaggtttagtcaagtggtaaaatgacaggtcttgaatcc 21487151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 162 - 264
Target Start/End: Complemental strand, 30054618 - 30054516
Alignment:
Q  162 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgaggcccactagtgcctttggatgtaggtacatgtaat 261  Q
    ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| ||| |||||||||||||| | ||||| |||||||    
T  30054618 aactccaaaggcttggtctagtggtaaaaagtcaagtcttgaatccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaat 30054519  T
Q  262 tac 264  Q
    |||    
T  30054518 tac 30054516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 162 - 264
Target Start/End: Original strand, 20014414 - 20014516
Alignment:
Q  162 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgaggcccactagtgcctttggatgtaggtacatgtaat 261  Q
    |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||| |||||||| | ||||| |||||||    
T  20014414 aactccaaagtcttggtctagtggtaaaaagacagatcttgaatccgagagaacccgggttcgagtcccgctagtacctttggagggaggtaaatgtaat 20014513  T
Q  262 tac 264  Q
    |||    
T  20014514 tac 20014516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 161 - 245
Target Start/End: Original strand, 15034410 - 15034494
Alignment:
Q  161 gaactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgaggcccactagtgcctttgga 245  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| || |||||||||||||||    
T  15034410 gaactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgaaagaacccaggttcgagccctactagtgcctttgga 15034494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 162 - 264
Target Start/End: Complemental strand, 30370236 - 30370134
Alignment:
Q  162 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgaggcccactagtgcctttggatgtaggtacatgtaat 261  Q
    |||||||||||||||||||||||||||||||||| || |||||| |||||||| ||||||||||| |||||||||| ||||||| | ||||| |||||||    
T  30370236 aactccaaaggcttggtctagtggtaaaaagacaagttttgaattcgagagaatccgggttcgagccccactagtgtctttggagggaggtaaatgtaat 30370137  T
Q  262 tac 264  Q
    |||    
T  30370136 tac 30370134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 162 - 264
Target Start/End: Original strand, 12025137 - 12025239
Alignment:
Q  162 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgaggcccactagtgcctttggatgtaggtacatgtaat 261  Q
    |||||||||| ||||||||||||||||||| |||| |||||||| |||||||||| ||||||||| |||| ||||||||||||| | ||||| |||||||    
T  12025137 aactccaaagacttggtctagtggtaaaaatacagatcttgaattcgagagaacctgggttcgagccccattagtgcctttggaggaaggtaaatgtaat 12025236  T
Q  262 tac 264  Q
    |||    
T  12025237 tac 12025239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 162 - 260
Target Start/End: Original strand, 45323962 - 45324060
Alignment:
Q  162 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgaggcccactagtgcctttggatgtaggtacatgtaa 260  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| || ||| ||||||| |||||| | ||||| ||||||    
T  45323962 aactccaaaggcttggtctagtggtaaaacgacaggtcttgaatccgagagaacctgggttccagccccgctagtgcttttggagggaggtaaatgtaa 45324060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 165 - 260
Target Start/End: Original strand, 21090074 - 21090169
Alignment:
Q  165 tccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgaggcccactagtgcctttggatgtaggtacatgtaa 260  Q
    |||||||||||||||||||||||||| |||||||||||||| ||||||||  |||||||||| ||| |||||||| ||||| | ||||| ||||||    
T  21090074 tccaaaggcttggtctagtggtaaaatgacaggtcttgaattcgagagaattcgggttcgagccccgctagtgccgttggagggaggtaaatgtaa 21090169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 186 - 260
Target Start/End: Original strand, 4573359 - 4573433
Alignment:
Q  186 taaaaagacaggtcttgaatccgagagaacccgggttcgaggcccactagtgcctttggatgtaggtacatgtaa 260  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||| | ||||| ||||||    
T  4573359 taaaaagacaggtcttgaatccgagagaacccgggttcgagccccactaatgtctttggagggaggtaaatgtaa 4573433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 162 - 264
Target Start/End: Complemental strand, 33763430 - 33763328
Alignment:
Q  162 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgaggcccactagtgcctttggatgtaggtacatgtaat 261  Q
    ||||| ||||| |||||||||| ||||||||||||||||||||| |||||||| |  |||||||| ||| ||||||||||| || | ||| | |||||||    
T  33763430 aactctaaaggtttggtctagtagtaaaaagacaggtcttgaattcgagagaatctaggttcgagccccgctagtgcctttagagggaggcaaatgtaat 33763331  T
Q  262 tac 264  Q
    |||    
T  33763330 tac 33763328  T

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Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 168 - 216
Target Start/End: Original strand, 35617942 - 35617990
Alignment:
Q  168 aaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacc 216  Q
    ||||| ||||||||||||||||| |||||||||||||||| ||||||||    
T  35617942 aaaggtttggtctagtggtaaaatgacaggtcttgaatccaagagaacc 35617990  T

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Target: chr6 (Bit Score: 72; Significance: 8e-33; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 165 - 260
Target Start/End: Original strand, 14496311 - 14496406
Alignment:
Q  165 tccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgaggcccactagtgcctttggatgtaggtacatgtaa 260  Q
    |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||| ||||||    
T  14496311 tccaaaggtttggtctagtggtaaaaagaaaggtcttgaatccgagagaacccgggttcgagccccactagtgcctttggagggaggtaaatgtaa 14496406  T

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Target: chr6; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 162 - 260
Target Start/End: Complemental strand, 35163926 - 35163828
Alignment:
Q  162 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgaggcccactagtgcctttggatgtaggtacatgtaa 260  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||| | ||||| ||||||    
T  35163926 aacttcaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaaccagggttcgagccccactaatgcctttggagggaggtaaatgtaa 35163828  T

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Target: chr6; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 162 - 260
Target Start/End: Complemental strand, 2711910 - 2711812
Alignment:
Q  162 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgaggcccactagtgcctttggatgtaggtacatgtaa 260  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||||| |||||| || |||||| ||||||||||| |||||| | ||||| ||||||    
T  2711910 aactcgaaaggcttggtctagtggtaaaatgacaggtcttgaatccgatagaacctggattcgagccccactagtgcttttggagggaggtaaatgtaa 2711812  T

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Target: chr6; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 168 - 264
Target Start/End: Complemental strand, 19686997 - 19686901
Alignment:
Q  168 aaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgaggcccactagtgcctttggatgtaggtacatgtaattac 264  Q
    ||||| |||||||||||||||||| |||||||||||||| ||||||||| ||||||||| ||| |||||||||||| | | ||||| ||||||||||    
T  19686997 aaaggtttggtctagtggtaaaaaaacaggtcttgaatctgagagaacctgggttcgagcccctctagtgcctttgtagggaggtaaatgtaattac 19686901  T

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Target: chr6; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 162 - 261
Target Start/End: Complemental strand, 14505698 - 14505600
Alignment:
Q  162 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgaggcccactagtgcctttggatgtaggtacatgtaat 261  Q
    ||||||||||||||||||||| |||||||| ||| || |||||||||||||| ||||  |||||| ||| ||||||| |||||| | ||||| |||||||    
T  14505698 aactccaaaggcttggtctagaggtaaaaaaacaagt-ttgaatccgagagatcccgaattcgagccccgctagtgcttttggagggaggtaaatgtaat 14505600  T

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Target: scaffold0021 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 162 - 264
Target Start/End: Complemental strand, 107867 - 107765
Alignment:
Q  162 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgaggcccactagtgcctttggatgtaggtacatgtaat 261  Q
    |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||| |||||||||||||| | ||||| |||||||    
T  107867 aactccaaagacttggtctagtggtaaaaagacaggtcttgaattcgagagaacccgagttcgagccccgctagtgcctttggagggaggtaaatgtaat 107768  T
Q  262 tac 264  Q
    |||    
T  107767 tac 107765  T

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Target: chr5 (Bit Score: 71; Significance: 3e-32; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 162 - 260
Target Start/End: Original strand, 17064279 - 17064377
Alignment:
Q  162 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgaggcccactagtgcctttggatgtaggtacatgtaa 260  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | | |||||||||||||| | ||||| ||||||    
T  17064279 aactccaaaggcttggtctagtggtaaaatgacaggtcttgaatccgagagaacccgggttcgagcctcgctagtgcctttggagggaggtaaatgtaa 17064377  T

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Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 162 - 241
Target Start/End: Complemental strand, 20983179 - 20983100
Alignment:
Q  162 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgaggcccactagtgcctt 241  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| |||||| ||||||||||| ||| ||||||||||    
T  20983179 aactccaaaggcttggtctagtgataaaaagacaggtcttgaatccaagagaatccgggttcgagccccgctagtgcctt 20983100  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 162 - 243
Target Start/End: Complemental strand, 35237199 - 35237118
Alignment:
Q  162 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgaggcccactagtgcctttg 243  Q
    ||||| ||||||||||||||||||||||| || | ||||||||| |||||||| | || |||||| ||| |||||| |||||    
T  35237199 aactctaaaggcttggtctagtggtaaaatgatacgtcttgaattcgagagaatctggattcgagccccgctagtgtctttg 35237118  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 243
Target Start/End: Original strand, 37976530 - 37976583
Alignment:
Q  190 aagacaggtcttgaatccgagagaacccgggttcgaggcccactagtgcctttg 243  Q
    ||||||||||||||||||||||||||| ||||||||| ||| ||||||| ||||    
T  37976530 aagacaggtcttgaatccgagagaacctgggttcgagccccgctagtgcatttg 37976583  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 173 - 214
Target Start/End: Original strand, 41910793 - 41910834
Alignment:
Q  173 cttggtctagtggtaaaaagacaggtcttgaatccgagagaa 214  Q
    |||| ||||||||||||||||||||||||||||| |||||||    
T  41910793 cttgctctagtggtaaaaagacaggtcttgaatctgagagaa 41910834  T

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Target: scaffold0691 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 162 - 264
Target Start/End: Complemental strand, 7141 - 7043
Alignment:
Q  162 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgaggcccactagtgcctttggatgtaggtacatgtaat 261  Q
    ||||||||||||||| | |||||||||||||||||| || |||   ||||||| ||||||||||| ||| ||||||| |||||| | | ||| |||||||    
T  7141 aactccaaaggcttgtt-tagtggtaaaaagacaggactcgaa---gagagaatccgggttcgagtcccgctagtgcgtttggagggaagtaaatgtaat 7046  T

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