View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16291_low_15 (Length: 246)
Name: NF16291_low_15
Description: NF16291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16291_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 127; Significance: 1e-65; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 35 - 225
Target Start/End: Complemental strand, 13943697 - 13943507
Alignment:
| Q |
35 |
tcaatcagattacaaatatatcttgatacataacttgtcttgaccacattatcaatcatgaatccattttgtttgaaattgattcaaatcatatttctca |
134 |
Q |
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| T |
13943697 |
tcaatcaaattacaaacatatcttgacacataacttgtgatgaccacaatgtcaattatgaatcaactttgttttaaattgattcaaatcatatttctca |
13943598 |
T |
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| Q |
135 |
tgtgtttggtgtttcaagcataccaacttgtttgttcaaaagaggttgttagatgcattcaaagtgagaggcaggcacttcttcaattcaa |
225 |
Q |
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| T |
13943597 |
tgtgtttgttgtttcaagcataccaacttgtttgttcaaaagaggttgttaggtgcatacaaagtgagaggcaagcacttctacaattcaa |
13943507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 32 - 226
Target Start/End: Complemental strand, 14027803 - 14027609
Alignment:
| Q |
32 |
caatcaatcagattacaaatatatcttgatacataacttgtcttgaccacattatcaatcatgaatccattttgtttgaaattgattcaaatcatatttc |
131 |
Q |
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| T |
14027803 |
caatcaatcaaattacaaacatatcttgacacataacttgtgatgaccacaatgtcaattatgaatccattttctatgaaattgattcaagccatatttc |
14027704 |
T |
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| Q |
132 |
tcatgtgtttggtgtttcaagcataccaacttgtttgttcaaaagaggttgttagatgcattcaaagtgagaggcaggcacttcttcaattcaag |
226 |
Q |
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|||| ||||||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |
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| T |
14027703 |
tcatatgtttggtgttgcaagcagaccagtttgtttgttcaaaagaggttgttagatgcattcaaagtgagaggcaggcactcctgcaattcaag |
14027609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 61 - 226
Target Start/End: Complemental strand, 14017733 - 14017568
Alignment:
| Q |
61 |
tacataacttgtcttgaccacattatcaatcatgaatccattttgtttgaaattgattcaaatcatatttctcatgtgtttggtgtttcaagcataccaa |
160 |
Q |
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|||||||||||| |||||||| | ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
14017733 |
tacataacttgtgatgaccacaatgtcaattatgaatccattttgttttaaattgattcaaatcatatttctcatgtgtttggtgtttcaagcagaccaa |
14017634 |
T |
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| Q |
161 |
cttgtttgttcaaaagaggttgttagatgcattcaaagtgagaggcaggcacttcttcaattcaag |
226 |
Q |
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||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||| || |||||| |
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| T |
14017633 |
cttatttgttcaaaagaggttgttagatgtattcaaagtgagaggaaggcacttctacagttcaag |
14017568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 32 - 227
Target Start/End: Original strand, 13470267 - 13470459
Alignment:
| Q |
32 |
caatcaatcagattacaaatatatcttgatacataacttgtcttgaccacattatcaatcatgaatccattttgtttgaaattgattcaaatcatatttc |
131 |
Q |
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|||| ||||| ||||||||||||||||||||||||||||||| |||||||| | ||||| ||||||||||||||||||||||||| ||||| ||||||| |
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| T |
13470267 |
caataaatcaaattacaaatatatcttgatacataacttgtcatgaccacaatgtcaatgatgaatccattttgtttgaaattgagtcaaacaatatttc |
13470366 |
T |
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| Q |
132 |
tcatgtgtttggtgtttcaagcataccaacttgtttgttcaaaagaggttgttagatgcattcaaagtgagaggcaggcacttcttcaattcaagg |
227 |
Q |
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|||| ||||||||||| ||||||| | |||||||||||||| | ||||| || ||||| |||||||||||||||||||||||||||||||||| |
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| T |
13470367 |
tcatctgtttggtgttgcaagcat---attttgtttgttcaaaaaaagttgtcaggtgcatacaaagtgagaggcaggcacttcttcaattcaagg |
13470459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 32 - 227
Target Start/End: Complemental strand, 14087345 - 14087150
Alignment:
| Q |
32 |
caatcaatcagattacaaatatatcttgatacataacttgtcttgaccacattatcaatcatgaatccattttgtttgaaattgattcaaatcatatttc |
131 |
Q |
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|||||||||| |||||| | |||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||| | |||| ||||||| |
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| T |
14087345 |
caatcaatcaaattacatacatatcttgatacataacttgtcatgaccacattgtcaatcatgaatctattttgtttgaaattggtccaaacaatatttc |
14087246 |
T |
|
| Q |
132 |
tcatgtgtttggtgtttcaagcataccaacttgtttgttcaaaagaggttgttagatgcattcaaagtgagaggcaggcacttcttcaattcaagg |
227 |
Q |
| |
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|||| | ||||||||| |||| | |||| |||||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||| |||| |
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| T |
14087245 |
tcatatatttggtgttgcaagtagaccagcttgtttgttcaaaagaggttgttaggtgcatacaaagtgagaggacagcacttcttcaatttaagg |
14087150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 68 - 226
Target Start/End: Complemental strand, 14049554 - 14049396
Alignment:
| Q |
68 |
cttgtcttgaccacattatcaatcatgaatccattttgtttgaaattgattcaaatcatatttctcatgtgtttggtgtttcaagcataccaacttgttt |
167 |
Q |
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|||||| |||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||| |
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| T |
14049554 |
cttgtcatgaccacaatgtcaatcatgaatccattttgttttaaattgattcaaatcatatttctcatgtgtttggtgttgcaagcagaccagcttgttt |
14049455 |
T |
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| Q |
168 |
gttcaaaagaggttgttagatgcattcaaagtgagaggcaggcacttcttcaattcaag |
226 |
Q |
| |
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| |||||||||||||| || ||||| ||||||||||| ||||||||||| ||||||||| |
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| T |
14049454 |
gctcaaaagaggttgtcaggtgcatacaaagtgagagacaggcacttctgcaattcaag |
14049396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 35 - 227
Target Start/End: Complemental strand, 14113194 - 14113004
Alignment:
| Q |
35 |
tcaatcagattacaaatatatcttgatacataa-cttgtcttgaccacattatcaatcatgaatccattttgtttgaaattgattcaaatcatatttctc |
133 |
Q |
| |
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||||||| |||||| | |||||||| |||| || ||||| |||||||| | ||||| ||| ||||||||||||||||||||||||||||| |||||||| |
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| T |
14113194 |
tcaatcaaattacatacatatcttgctacagaaacttgtgatgaccacaatgtcaatgatggatccattttgtttgaaattgattcaaatcctatttctc |
14113095 |
T |
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| Q |
134 |
atgtgtttggtgtttcaagcataccaacttgtttgttcaaaagaggttgttagatgcattcaaagtgagaggcaggcacttcttcaattcaagg |
227 |
Q |
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|||| ||||||||| |||||| || ||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||| |||||||||| |
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| T |
14113094 |
atgtctttggtgttgcaagcagac---cttgtttgttcaaaagaggctgttaggtgcatacaaagtgagaggcaggcacttctacaattcaagg |
14113004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 32 - 227
Target Start/End: Original strand, 13872491 - 13872687
Alignment:
| Q |
32 |
caatcaatcagattacaaatatatcttgatacataacttgtctt----gaccacattatcaatcatgaatccattttgtttgaaattgattcaaatcata |
127 |
Q |
| |
|
|||||||||| |||||||||||||||||||| ||||||||| | ||||||| | |||| |||||||||| ||||||||||||||| |||| ||| |
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| T |
13872491 |
caatcaatcaaattacaaatatatcttgataaataacttgtgatcgatgaccacaatgccaatgatgaatccatcttgtttgaaattgatacaaacaata |
13872590 |
T |
|
| Q |
128 |
tttctcatgtgtttggtgtttcaagcataccaacttgtttgttcaaaagaggttgttagatgcattcaaagtgagaggcaggcacttcttcaattcaagg |
227 |
Q |
| |
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|||||||||||||||| ||| |||||| ||| ||||||||||||||||||||||||| ||||| ||||||||||| |||||||| ||| ||||||||| |
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| T |
13872591 |
tttctcatgtgtttggcgttgcaagcagacc---ttgtttgttcaaaagaggttgttaggtgcatacaaagtgagagacaggcactccttaaattcaagg |
13872687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 60 - 227
Target Start/End: Original strand, 13860386 - 13860553
Alignment:
| Q |
60 |
atacataacttgtcttgaccacattatcaatcatgaatccattttgtttgaaattgattcaaatcatatttctcatgtgtttggtgtttcaagcatacca |
159 |
Q |
| |
|
||||||||||||| |||||| | | ||||| ||||||||||||| | | |||||||||||| |||||||||||| ||||||||||| ||||| |||| |
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| T |
13860386 |
atacataacttgtgatgaccaaaatgtcaattatgaatccattttctattaaattgattcaagccatatttctcatatgtttggtgttgcaagctgacca |
13860485 |
T |
|
| Q |
160 |
acttgtttgttcaaaagaggttgttagatgcattcaaagtgagaggcaggcacttcttcaattcaagg |
227 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||| ||||||||||||||||| ||||| |||||||||| |
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| T |
13860486 |
gcttgtttgttcaaaagagtttgttaggtgcatacaaagtgagaggcaggcgcttctacaattcaagg |
13860553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 92 - 227
Target Start/End: Complemental strand, 14000576 - 14000444
Alignment:
| Q |
92 |
atgaatccattttgtttgaaattgattcaaatcatatttctcatgtgtttggtgtttcaagcataccaacttgtttgttcaaaagaggttgttagatgca |
191 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||| || |||||| |||||| |||||||||||||||| |
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| T |
14000576 |
atgaatccattttgtttgaaattgattcaaacaatatttctcatctgtttggtgttgcaagcagac---tttgtttattcaaaggaggttgttagatgca |
14000480 |
T |
|
| Q |
192 |
ttcaaagtgagaggcaggcacttcttcaattcaagg |
227 |
Q |
| |
|
| |||||||||||| | ||||||||||||||||||| |
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| T |
14000479 |
tacaaagtgagaggaaagcacttcttcaattcaagg |
14000444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 87 - 227
Target Start/End: Original strand, 13890403 - 13890543
Alignment:
| Q |
87 |
caatcatgaatccattttgtttgaaattgatt---caaatcatatttctcatgtgtttggtgtttcaagcataccaacttgtttgttcaaaagaggttgt |
183 |
Q |
| |
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|||| ||||| ||||||||||||||||| ||| |||| ||||||| | | | ||||||||| |||||| ||| |||||||||||||||||||||| |
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| T |
13890403 |
caataatgaacccattttgtttgaaattaattattcaaaccatatttttaacgcttttggtgttgcaagcagacc---ttgtttgttcaaaagaggttgt |
13890499 |
T |
|
| Q |
184 |
tagatgcattcaaagtgagaggcaggcacttcttcaattcaagg |
227 |
Q |
| |
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|| ||||||||||||||||||||| ||||||||||||||||||| |
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| T |
13890500 |
taaatgcattcaaagtgagaggcatgcacttcttcaattcaagg |
13890543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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