View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16291_low_4 (Length: 478)

Name: NF16291_low_4
Description: NF16291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16291_low_4
NF16291_low_4
[»] chr1 (1 HSPs)
chr1 (10-478)||(50530022-50530490)


Alignment Details
Target: chr1 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 10 - 478
Target Start/End: Complemental strand, 50530490 - 50530022
Alignment:
Q  10 acatcatcacacacagaaaaacaaaaccaaagagcgcacgcaatgacaagccatggctcatcgttttcgagcctcccaaactatctccaagccgtcgcta 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50530490 acatcatcacacacagaaaaacaaaaccaaagagcgcacgcaatgacaagccatggctcatcgttttcgagcctcccaaactatctccaagccgtcgcta 50530391  T
Q  110 aaactccctctcgctttgctcgtcgcggcttctccgtctccacttcttacgaagaaatgagccgcgttcgagctaggtccggtaacagcatgcgcaaaac 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||     
T  50530390 aaactccctctcgctttgctcgtcgcggcttctccgtctccacttcttacgaagaaatgagccgtgttcgagctaggtccggcaacagcatgcgcaaaag 50530291  T
Q  210 cctccgttggtttgacttagtcagctttggtatcggtggaatggtcggcgccggagtcttcgtcaccactggccacgctacccgtgttcacgctggccct 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50530290 cctccgttggtttgacttagtcagctttggtatcggtggaatggtcggcgccggagtcttcgtcaccactggccacgctacccgtgttcacgctggccct 50530191  T
Q  310 tccgttgttctatcttacgccattgccggtttctgtgctctcctctctgccttttgttacactgagtttgcggttgatatgccagtcgccggtggcgctt 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  50530190 tccgttgttctatcttacgccattgccggtttctgtgctctcctctctgccttttgttacactgagtttgcggttgatatgccggtcgccggtggcgctt 50530091  T
Q  410 ttagcttcctccgtgtcacattcggagaagtggcggcatttatagccggtgcaaatctcatcatggatt 478  Q
    |||||| |||||||||||||||||| ||| | ||||| |||||| ||||||||||||||||||||||||    
T  50530090 ttagctacctccgtgtcacattcggtgaatttgcggcctttataaccggtgcaaatctcatcatggatt 50530022  T

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