View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16291_low_5 (Length: 458)

Name: NF16291_low_5
Description: NF16291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16291_low_5
NF16291_low_5
[»] chr3 (1 HSPs)
chr3 (18-370)||(34624777-34625126)
[»] chr1 (3 HSPs)
chr1 (37-104)||(51045456-51045524)
chr1 (260-317)||(51045739-51045796)
chr1 (383-437)||(36575544-36575598)
[»] chr8 (1 HSPs)
chr8 (382-439)||(5014829-5014886)
[»] chr4 (3 HSPs)
chr4 (386-435)||(8480957-8481006)
chr4 (383-435)||(41774644-41774696)
chr4 (188-244)||(43558785-43558841)
[»] chr2 (2 HSPs)
chr2 (382-435)||(35298555-35298608)
chr2 (383-439)||(31620525-31620581)


Alignment Details
Target: chr3 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 18 - 370
Target Start/End: Complemental strand, 34625126 - 34624777
Alignment:
Q  18 atgaatggtgggcttaatttggtagctagagatatttgtgaagaagctggcagaggttagaataagaagattatcttctccaatcccatatggtgttaat 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||    
T  34625126 atgaatggtgggcttaatttggtagctagagatatttgtgaagaagctggcagaggttagaataagaagattatcttctccaatcc-atatagtgttaat 34625028  T
Q  118 ttgctggcatttcattatttatgattctgcttgcgggctccatgctaccaccatgtatttttatgaataaaatccctccaaaaggttaaaattggctgct 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34625027 ttgctggcatttcattatttatgattctgcttgcgggctccatgctaccaccatgtatttttatgaataaaatccctccaaaaggttaaaattggctgct 34624928  T
Q  218 caaaatctgcattattgaagagagagagatatactataggggtaggtcttctctatgatcatgtacgtacgggttcaaaaacaggtgtccaaataatatt 317  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34624927 caaaatctgcattattgaagaga--gagatatactataggggtaggtcttctctatgatcatgtacgtacgggttcaaaaacaggtgtccaaataatatt 34624830  T
Q  318 aatatgatgcatttagtatacgtccctctaaaaaatagtccaaatgtagacat 370  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  34624829 aatatgatgcatttagtatatgtccctccaaaaaatagtccaaatgtagacat 34624777  T

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Target: chr1 (Bit Score: 49; Significance: 7e-19; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 37 - 104
Target Start/End: Original strand, 51045456 - 51045524
Alignment:
Q  37 tggtagctagagatatttgtga-agaagctggcagaggttagaataagaagattatcttctccaatccc 104  Q
    |||||||||||||||||||||  |||| |||||||||||||||||||||||||||||||||| ||||||    
T  51045456 tggtagctagagatatttgtgggagaatctggcagaggttagaataagaagattatcttctcaaatccc 51045524  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 260 - 317
Target Start/End: Original strand, 51045739 - 51045796
Alignment:
Q  260 taggtcttctctatgatcatgtacgtacgggttcaaaaacaggtgtccaaataatatt 317  Q
    |||||||||||| ||||||| ||||||||| || ||||||||||||||||||||||||    
T  51045739 taggtcttctctttgatcatatacgtacggttttaaaaacaggtgtccaaataatatt 51045796  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 383 - 437
Target Start/End: Complemental strand, 36575598 - 36575544
Alignment:
Q  383 gagtaaactctcatttgagtttctgaaagtgtatatcgctatcaaacacgtcctt 437  Q
    |||||||| |||||||||||  |||||||||||  ||||||||| ||||||||||    
T  36575598 gagtaaaccctcatttgagtccctgaaagtgtacctcgctatcagacacgtcctt 36575544  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 439
Target Start/End: Complemental strand, 5014886 - 5014829
Alignment:
Q  382 tgagtaaactctcatttgagtttctgaaagtgtatatcgctatcaaacacgtccttga 439  Q
    ||||||||| |||||||| ||  |||||||||||  |||||||||| |||||||||||    
T  5014886 tgagtaaaccctcatttgggtccctgaaagtgtacctcgctatcaaccacgtccttga 5014829  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 435
Target Start/End: Complemental strand, 8481006 - 8480957
Alignment:
Q  386 taaactctcatttgagtttctgaaagtgtatatcgctatcaaacacgtcc 435  Q
    |||||||||||||||||  |||||||||||| |||||||||  |||||||    
T  8481006 taaactctcatttgagtccctgaaagtgtatctcgctatcagtcacgtcc 8480957  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 383 - 435
Target Start/End: Original strand, 41774644 - 41774696
Alignment:
Q  383 gagtaaactctcatttgagtttctgaaagtgtatatcgctatcaaacacgtcc 435  Q
    ||||||||||||||||| ||  |||||||||||  |||||||||| |||||||    
T  41774644 gagtaaactctcatttgggtccctgaaagtgtacctcgctatcaaccacgtcc 41774696  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 188 - 244
Target Start/End: Complemental strand, 43558841 - 43558785
Alignment:
Q  188 aatccctccaaaaggttaaaattggctgctcaaaatctgcattattgaagagagaga 244  Q
    ||||||||||| | | | ||||||||||  ||||||||||||||||| |||||||||    
T  43558841 aatccctccaacatgctgaaattggctgaacaaaatctgcattattggagagagaga 43558785  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 435
Target Start/End: Original strand, 35298555 - 35298608
Alignment:
Q  382 tgagtaaactctcatttgagtttctgaaagtgtatatcgctatcaaacacgtcc 435  Q
    ||||||||| |||||||| ||| |||||||||||  |||||||||| |||||||    
T  35298555 tgagtaaaccctcatttgggttcctgaaagtgtacctcgctatcaaccacgtcc 35298608  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 383 - 439
Target Start/End: Original strand, 31620525 - 31620581
Alignment:
Q  383 gagtaaactctcatttgagtttctgaaagtgtatatcgctatcaaacacgtccttga 439  Q
    |||||||| |||||||||||  |||||||||||  ||||||||| | ||||||||||    
T  31620525 gagtaaaccctcatttgagtccctgaaagtgtacctcgctatcagatacgtccttga 31620581  T

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