View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16291_low_6 (Length: 426)
Name: NF16291_low_6
Description: NF16291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16291_low_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 1 - 409
Target Start/End: Original strand, 42522372 - 42522780
Alignment:
| Q |
1 |
gtttggtgatgtccttgattggatcattacttacaatgcttgtagtaagtttccttcagtttttatattattgctcctagaattattgaccatagcattt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42522372 |
gtttggtgatgtccttgattggatcattacttacaatgcttgtagtaagtttccttcagtttttatattattgctcctagaattattgaccatagcattt |
42522471 |
T |
|
| Q |
101 |
tattaattaacattaaccttgtttacagactttgatattgccatgtgtttgttacctaagaatcttgcggggaaaagtaacgcgaatacaggtatgacag |
200 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42522472 |
tattaattaacatcaaccttgtttacagactttgatattgccatgtgtttgttacctaagaatcttgcggggaaaagtaacgcgaatacaggtatgacag |
42522571 |
T |
|
| Q |
201 |
aagttacgtcatcaagctatatttgttatgatgaattatttttgactcgacttccattgcatatttctacaggcaggactttgcattacaatcattgtag |
300 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42522572 |
aagttatgtcatcaagctatatttgttatgatgaattatttttgattcgacttccattgcatatttctacaggcaggactttgcattacaatcattgtag |
42522671 |
T |
|
| Q |
301 |
taggcgttgcgtgttcttccgttggaacgtactcagcccttgcggagattgttaagagtttgagtggatgaagttttgtgtggaagatgagagttgtttg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42522672 |
taggcgttgcgtgttcttccgttggaacgtactcagcccttgcggagattgttaagagtttgagtggatgaagttttgtgtggaagatgagagttgtttg |
42522771 |
T |
|
| Q |
401 |
ctagtatct |
409 |
Q |
| |
|
||||||||| |
|
|
| T |
42522772 |
ctagtatct |
42522780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University