View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16291_low_8 (Length: 388)
Name: NF16291_low_8
Description: NF16291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16291_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 15 - 376
Target Start/End: Original strand, 4687916 - 4688278
Alignment:
| Q |
15 |
aaacattttggaacatctactggtctaaaatcctaattatggtgggtaattagaaagaagaagnnnnnnnngttagcaataaacattggaaaactatgat |
114 |
Q |
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| T |
4687916 |
aaacattttggaacatctactggtctaaaatcctaattatggtgggtaattagaaagaagaagaaaaaaaatttaacaataaacattggaaaactatgat |
4688015 |
T |
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| Q |
115 |
ttgtcattttcttaggaatctcgtgaataattctttgattaaaaggtaagagcaccatcaatattaatttc-aacttatgccgccaagtttgtgtgcaat |
213 |
Q |
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| T |
4688016 |
ttgtcattttcttaggaatctcgtgaataattctttgattaaaaggtaagagcaccatcaatattaatttctaacttatgccgccaagtttgtgtgcaat |
4688115 |
T |
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| Q |
214 |
tacacggaataatgttgacaagtcataaatggtatatcaaatatacatacaattatgtcaagtacaatttcatgttctgtgattgatattaattattgag |
313 |
Q |
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| T |
4688116 |
tacacggaataatgttgacaagtcataaatggtatatcaaatatacatacaattatgtcaagtacaatttcatgttctgtgattgatattaattattgag |
4688215 |
T |
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| Q |
314 |
taacccacataatgaacacctaataataaaggggatcctccctccaacttgtaatcacaggtt |
376 |
Q |
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| T |
4688216 |
taacccacataatgaacacctaataataaaggggatcctccctccaacttgtaatcacaggtt |
4688278 |
T |
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