View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16292_high_1 (Length: 407)
Name: NF16292_high_1
Description: NF16292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16292_high_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 23 - 282
Target Start/End: Complemental strand, 30638904 - 30638645
Alignment:
| Q |
23 |
ctggtattaaatcttgactttgaagattttgacccaannnnnnngatttagctgtcttgttttttatattaaatgtgttgttgaattttcagagaagagc |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30638904 |
ctggtattaaatcttgactttgaagattttgacccaattttttttgattatctgtcttgttttttatattaaatgtgttgttgaattttcagagaagagc |
30638805 |
T |
|
| Q |
123 |
agtggggggccaagaagtattgctgcatttttctctaaaaggtgtttaccacctggaggtgaaagcgggaaaccttgtgaaacatcgccacagccatctt |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30638804 |
agtggggggccaagaagtattgctgcatttttctctaaaaggtgcttaccacctggaggtgaaagcgggaaaccttgtgaaacatcgccacagccatctt |
30638705 |
T |
|
| Q |
223 |
tgaagtcatattctgccatccatgatcctcaagacagcagatcacatgaaatctagtatc |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30638704 |
tgaagtcatattctgccatccatgatcctcaagacagcagatcacatgaaatctagtatc |
30638645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 332 - 398
Target Start/End: Complemental strand, 30638596 - 30638530
Alignment:
| Q |
332 |
taaaaattatagatggtggttgcgcgtggggatcttgtaccaatgtaaggaagtttctgagtataat |
398 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30638596 |
taaaaattatagatggtggttgcgcgtggggatcttgtaccaatgtaaggaagtttctgagtataat |
30638530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University