View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16292_high_4 (Length: 245)

Name: NF16292_high_4
Description: NF16292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16292_high_4
NF16292_high_4
[»] chr7 (13 HSPs)
chr7 (19-229)||(2329693-2329903)
chr7 (19-229)||(2337592-2337802)
chr7 (19-229)||(2321195-2321405)
chr7 (19-229)||(1088653-1088863)
chr7 (19-229)||(1106002-1106212)
chr7 (19-229)||(1557361-1557571)
chr7 (19-229)||(1596059-1596269)
chr7 (19-229)||(1604389-1604599)
chr7 (19-229)||(1541417-1541627)
chr7 (19-229)||(1550651-1550861)
chr7 (53-229)||(9532037-9532212)
chr7 (55-229)||(3955445-3955619)
chr7 (61-229)||(30792308-30792477)
[»] scaffold0491 (2 HSPs)
scaffold0491 (55-229)||(1103-1277)
scaffold0491 (19-229)||(5954-6164)
[»] chr8 (4 HSPs)
chr8 (55-229)||(18739224-18739398)
chr8 (55-229)||(18744188-18744362)
chr8 (19-229)||(18749113-18749323)
chr8 (19-229)||(18723461-18723671)
[»] chr1 (2 HSPs)
chr1 (53-228)||(19250411-19250585)
chr1 (54-228)||(41668777-41668951)
[»] chr5 (3 HSPs)
chr5 (54-228)||(36620613-36620787)
chr5 (142-228)||(39102305-39102391)
chr5 (54-228)||(8873023-8873198)
[»] chr4 (3 HSPs)
chr4 (54-228)||(42977703-42977877)
chr4 (139-228)||(54122926-54123015)
chr4 (54-228)||(48712362-48712535)
[»] chr3 (1 HSPs)
chr3 (54-228)||(31658025-31658199)
[»] chr6 (1 HSPs)
chr6 (54-228)||(1257819-1257993)


Alignment Details
Target: chr7 (Bit Score: 143; Significance: 3e-75; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 19 - 229
Target Start/End: Complemental strand, 2329903 - 2329693
Alignment:
Q  19 agatatgatagaccaaatgcaacccctttcacaacattaagcctttttctccaattgaattccacggctttaacttcatcatataagacagagaacaagc 118  Q
    ||||||||||||||||||||||| ||||| | |||||||| ||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||    
T  2329903 agatatgatagaccaaatgcaacacctttaataacattaaccctttttctccaattgaattccacggcttcaccttcatcatacaagacagagaacaagc 2329804  T
Q  119 tacctttctccatgtactcgtagattaaaaacatgattcttttgtgcaagcagaatccataaagcttcacgatatttcggtgctttatttttgataatat 218  Q
    ||||||||||||||||||||||||| ||||||||||||||| |||| |  |||||||||||||||||||||||||  ||||||||||| | |||||||||    
T  2329803 tacctttctccatgtactcgtagatcaaaaacatgattcttctgtggagacagaatccataaagcttcacgatatgccggtgctttatatctgataatat 2329704  T
Q  219 tctcgcttcat 229  Q
    |||| ||||||    
T  2329703 tctcacttcat 2329693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 19 - 229
Target Start/End: Complemental strand, 2337802 - 2337592
Alignment:
Q  19 agatatgatagaccaaatgcaacccctttcacaacattaagcctttttctccaattgaattccacggctttaacttcatcatataagacagagaacaagc 118  Q
    ||||||||||||||||||||||| ||||| | |||||||| ||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||    
T  2337802 agatatgatagaccaaatgcaacacctttaataacattaaccctttttctccaattgaattccacggcttcaacttcatcatacaagccagagaacaagc 2337703  T
Q  119 tacctttctccatgtactcgtagattaaaaacatgattcttttgtgcaagcagaatccataaagcttcacgatatttcggtgctttatttttgataatat 218  Q
    ||||||||||||||||||||||||| ||||||||||||||| |||| |  ||||||||||||||||||||||||| |||||||||||| | |||||||||    
T  2337702 tacctttctccatgtactcgtagatcaaaaacatgattcttctgtggagacagaatccataaagcttcacgatatgtcggtgctttatatctgataatat 2337603  T
Q  219 tctcgcttcat 229  Q
    | || ||||||    
T  2337602 tttcacttcat 2337592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 19 - 229
Target Start/End: Complemental strand, 2321405 - 2321195
Alignment:
Q  19 agatatgatagaccaaatgcaacccctttcacaacattaagcctttttctccaattgaattccacggctttaacttcatcatataagacagagaacaagc 118  Q
    ||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||| |   | |||||||| ||||| |||||||| |    
T  2321405 agatatgataggccaaaggcaacccctttaacaacattaagcctttttctccaattgaattccatggcctctgcatcatcatacaagacggagaacaaac 2321306  T
Q  119 tacctttctccatgtactcgtagattaaaaacatgattcttttgtgcaagcagaatccataaagcttcacgatatttcggtgctttatttttgataatat 218  Q
    | ||| |||||||||| | |||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||    
T  2321305 ttcctctctccatgtaatggtagatcaaaaacatgattcttttgtgcaagcaaaatccataaagcttcacaatatttcggtgctttatttctgataatat 2321206  T
Q  219 tctcgcttcat 229  Q
    |||| ||||||    
T  2321205 tctcacttcat 2321195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 19 - 229
Target Start/End: Complemental strand, 1088863 - 1088653
Alignment:
Q  19 agatatgatagaccaaatgcaacccctttcacaacattaagcctttttctccaattgaattccacggctttaacttcatcatataagacagagaacaagc 118  Q
    ||||| |||||| |||||||||| ||||| |||   |||| |||||||||||||||||||||||| ||||  || |||||||| ||||||||||||||||    
T  1088863 agataagatagagcaaatgcaactcctttaacagtgttaaccctttttctccaattgaattccacagcttctacatcatcatacaagacagagaacaagc 1088764  T
Q  119 tacctttctccatgtactcgtagattaaaaacatgattcttttgtgcaagcagaatccataaagcttcacgatatttcggtgctttatttttgataatat 218  Q
    | |||||||||||||| |  ||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |  ||||||||||| |||||||||    
T  1088763 ttcctttctccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaatatgtttgtgctttatttctgataatat 1088664  T
Q  219 tctcgcttcat 229  Q
    |||| ||||||    
T  1088663 tctcacttcat 1088653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 19 - 229
Target Start/End: Complemental strand, 1106212 - 1106002
Alignment:
Q  19 agatatgatagaccaaatgcaacccctttcacaacattaagcctttttctccaattgaattccacggctttaacttcatcatataagacagagaacaagc 118  Q
    |||||||| ||| |||||||||| ||||| | |   |||| |||| ||||||||||||||||||||||||  || |||||||| |||| |||||||| ||    
T  1106212 agatatgaaagagcaaatgcaactcctttaatagtgttaacccttgttctccaattgaattccacggcttctacatcatcatacaagatagagaacaggc 1106113  T
Q  119 tacctttctccatgtactcgtagattaaaaacatgattcttttgtgcaagcagaatccataaagcttcacgatatttcggtgctttatttttgataatat 218  Q
    | ||||||||||||||||  ||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||||||||    
T  1106112 ttcctttctccatgtactgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaatatgtcggtgctttatttctgataatat 1106013  T
Q  219 tctcgcttcat 229  Q
    |||| ||||||    
T  1106012 tctcacttcat 1106002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 19 - 229
Target Start/End: Original strand, 1557361 - 1557571
Alignment:
Q  19 agatatgatagaccaaatgcaacccctttcacaacattaagcctttttctccaattgaattccacggctttaacttcatcatataagacagagaacaagc 118  Q
    ||||| |||||| |||||||||| ||||| |||   |||| |||||||||||||||||||||||| ||||  || |||||||| ||||||||||||||||    
T  1557361 agataagatagagcaaatgcaactcctttaacagtgttaaccctttttctccaattgaattccacagcttccacatcatcatacaagacagagaacaagc 1557460  T
Q  119 tacctttctccatgtactcgtagattaaaaacatgattcttttgtgcaagcagaatccataaagcttcacgatatttcggtgctttatttttgataatat 218  Q
    | |||||||||||||| |  || || ||||||||||||||||||||||||||||||||||||||||||||||||| |  ||||||||||| |||||||||    
T  1557461 ttcctttctccatgtattgatatatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacgatatgtttgtgctttatttctgataatat 1557560  T
Q  219 tctcgcttcat 229  Q
    |||| ||||||    
T  1557561 tctcacttcat 1557571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 19 - 229
Target Start/End: Complemental strand, 1596269 - 1596059
Alignment:
Q  19 agatatgatagaccaaatgcaacccctttcacaacattaagcctttttctccaattgaattccacggctttaacttcatcatataagacagagaacaagc 118  Q
    |||||||| ||| |||||||||  ||||| |||   |||| |||| ||||||| ||||||||||||||||  || |||||||| ||||||||||||| ||    
T  1596269 agatatgaaagagcaaatgcaattcctttaacagtgttaacccttgttctccacttgaattccacggcttctacatcatcatacaagacagagaacaggc 1596170  T
Q  119 tacctttctccatgtactcgtagattaaaaacatgattcttttgtgcaagcagaatccataaagcttcacgatatttcggtgctttatttttgataatat 218  Q
    | ||||||||||||||||  ||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||||||||    
T  1596169 ttcctttctccatgtactgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaatatgtcggtgctttatttctgataatat 1596070  T
Q  219 tctcgcttcat 229  Q
    |||| ||||||    
T  1596069 tctcacttcat 1596059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 19 - 229
Target Start/End: Complemental strand, 1604599 - 1604389
Alignment:
Q  19 agatatgatagaccaaatgcaacccctttcacaacattaagcctttttctccaattgaattccacggctttaacttcatcatataagacagagaacaagc 118  Q
    |||||||| ||| |||||||||| ||||| | |   |||| |||||||||||| ||||||||||||||||  || |||||||| ||||||||||||||||    
T  1604599 agatatgaaagagcaaatgcaactcctttaatagtgttaaccctttttctccacttgaattccacggcttctacatcatcatacaagacagagaacaagc 1604500  T
Q  119 tacctttctccatgtactcgtagattaaaaacatgattcttttgtgcaagcagaatccataaagcttcacgatatttcggtgctttatttttgataatat 218  Q
    | |||||||||||||| |  ||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||||||||    
T  1604499 ttcctttctccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaatatgtcggtgctttatttctgataatat 1604400  T
Q  219 tctcgcttcat 229  Q
    | || ||||||    
T  1604399 tttcacttcat 1604389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 19 - 229
Target Start/End: Original strand, 1541417 - 1541627
Alignment:
Q  19 agatatgatagaccaaatgcaacccctttcacaacattaagcctttttctccaattgaattccacggctttaacttcatcatataagacagagaacaagc 118  Q
    |||||||| ||| |||||||||| ||||| |||   || | |||||| ||||| ||||||||||||||||  || |||||||| ||||||||||| ||||    
T  1541417 agatatgaaagagcaaatgcaactcctttaacagtgttgacccttttcctccacttgaattccacggcttctacatcatcatacaagacagagaataagc 1541516  T
Q  119 tacctttctccatgtactcgtagattaaaaacatgattcttttgtgcaagcagaatccataaagcttcacgatatttcggtgctttatttttgataatat 218  Q
    | ||| |||||||||| |  ||||| |||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||| |||||||||    
T  1541517 ttcctctctccatgtattgatagatcaaaaacatgattcttttgtgcaagcaaaatccataaagcttcacaatatgtcggtgctttatttctgataatat 1541616  T
Q  219 tctcgcttcat 229  Q
    |||| ||||||    
T  1541617 tctcacttcat 1541627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 19 - 229
Target Start/End: Original strand, 1550651 - 1550861
Alignment:
Q  19 agatatgatagaccaaatgcaacccctttcacaacattaagcctttttctccaattgaattccacggctttaacttcatcatataagacagagaacaagc 118  Q
    |||||||| ||| |||||||||  ||||| |||    ||| |||||||||||||||||||||||| ||||  || || ||||| ||||||| ||||||||    
T  1550651 agatatgaaagagcaaatgcaattcctttaacagtgctaatcctttttctccaattgaattccacagcttctacatcgtcatacaagacagtgaacaagc 1550750  T
Q  119 tacctttctccatgtactcgtagattaaaaacatgattcttttgtgcaagcagaatccataaagcttcacgatatttcggtgctttatttttgataatat 218  Q
    | ||| ||||||||||||  ||||| |||||||||||||| ||||||||||||||||||| ||||||||| |||| |||||||||||||| ||  |||||    
T  1550751 ttcctctctccatgtactgatagatcaaaaacatgattctcttgtgcaagcagaatccatgaagcttcacaatatgtcggtgctttatttctgtcaatat 1550850  T
Q  219 tctcgcttcat 229  Q
    |||| ||||||    
T  1550851 tctcacttcat 1550861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 53 - 229
Target Start/End: Original strand, 9532037 - 9532212
Alignment:
Q  53 cattaagcctttttctccaattgaattccacggctttaacttcatcatataagacagagaacaagctacctttctccatgtactcgtagattaaaaacat 152  Q
    ||||||| |||||||||||||||||||||||  |||  || |||||||| || |  |||||||| || |||||||| | ||| |  ||||| ||||||||    
T  9532037 cattaagtctttttctccaattgaattccacaacttctacatcatcatacaaaaacgagaacaaacttcctttctc-acgtattgatagatcaaaaacat 9532135  T
Q  153 gattcttttgtgcaagcagaatccataaagcttcacgatatttcggtgctttatttttgataatattctcgcttcat 229  Q
    ||||||||||| ||| || |||||||||||||| || ||||||  ||| ||||||||| ||||||||||||||||||    
T  9532136 gattcttttgtacaatcataatccataaagcttaacaatatttatgtgatttattttttataatattctcgcttcat 9532212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 55 - 229
Target Start/End: Original strand, 3955445 - 3955619
Alignment:
Q  55 ttaagcctttttctccaattgaattccacggctttaacttcatcatataagacagagaacaagctacctttctccatgtactcgtagattaaaaacatga 154  Q
    |||| |||||| ||||||| |||||  | |||||  || |||||||  ||||| ||||||||||| ||||| ||||| ||||  ||||| |||||||| |    
T  3955445 ttaacccttttcctccaatcgaattttatggcttcgacatcatcatgcaagacggagaacaagcttcctttttccatatactgatagatcaaaaacataa 3955544  T
Q  155 ttcttttgtgcaagcagaatccataaagcttcacgatatttcggtgctttatttttgataatattctcgcttcat 229  Q
     |||||| ||||| || ||||||||||||||||| ||||||| ||||||||||| |||||||||| || ||||||    
T  3955545 ctcttttatgcaaacaaaatccataaagcttcacaatatttctgtgctttatttctgataatattttcacttcat 3955619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 61 - 229
Target Start/End: Complemental strand, 30792477 - 30792308
Alignment:
Q  61 ctttttctccaattgaattccacggctttaacttcatcatataagacagagaacaagctacctttctccatgtactcgtagattaaaaacatgattcttt 160  Q
    ||||||||||||||||||| |||  |||  || |||||||| || ||| ||||| |||| | |||||| | ||| |  ||||| ||||||| ||||||||    
T  30792477 ctttttctccaattgaatttcacaacttctacatcatcatacaaaacaaagaactagcttcttttctctacgtattgatagatcaaaaacacgattcttt 30792378  T
Q  161 t-gtgcaagcagaatccataaagcttcacgatatttcggtgctttatttttgataatattctcgcttcat 229  Q
    | |||||||||||||| ||||||||| || ||||||  ||||||||||| ||||||||||||| ||||||    
T  30792377 ttgtgcaagcagaatctataaagcttaacaatatttatgtgctttatttatgataatattctcacttcat 30792308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0491 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: scaffold0491
Description:

Target: scaffold0491; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 55 - 229
Target Start/End: Original strand, 1103 - 1277
Alignment:
Q  55 ttaagcctttttctccaattgaattccacggctttaacttcatcatataagacagagaacaagctacctttctccatgtactcgtagattaaaaacatga 154  Q
    |||| |||||| ||||| |||||||||||| |||| || |||||||| ||||||||||||||||| |||||||||||||| |  ||||| ||||||||||    
T  1103 ttaacccttttcctccacttgaattccacgacttttacatcatcatacaagacagagaacaagcttcctttctccatgtattgatagatcaaaaacatga 1202  T
Q  155 ttcttttgtgcaagcagaatccataaagcttcacgatatttcggtgctttatttttgataatattctcgcttcat 229  Q
    |||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||| ||||||    
T  1203 ttcttttgtgcaagcagaatccataaagcttcacaatatgtcggtgctttatttctgataatattctcacttcat 1277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0491; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 19 - 229
Target Start/End: Original strand, 5954 - 6164
Alignment:
Q  19 agatatgatagaccaaatgcaacccctttcacaacattaagcctttttctccaattgaattccacggctttaacttcatcatataagacagagaacaagc 118  Q
    |||||||| ||| |||||||||| ||||| | |   ||||  ||||||||||| ||||||| || |||||  || |||||||| ||||||||||| ||||    
T  5954 agatatgaaagagcaaatgcaactcctttaatagtgttaactctttttctccacttgaattgcagggcttctacatcatcatacaagacagagaataagc 6053  T
Q  119 tacctttctccatgtactcgtagattaaaaacatgattcttttgtgcaagcagaatccataaagcttcacgatatttcggtgctttatttttgataatat 218  Q
    | ||| | |||||||| |  ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |  ||||||||||| || ||| ||    
T  6054 ttcctctatccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaaaccataaagcttcacgatatgtttgtgctttatttctgttaaaat 6153  T
Q  219 tctcgcttcat 229  Q
    |||| ||||||    
T  6154 tctcacttcat 6164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 111; Significance: 4e-56; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 55 - 229
Target Start/End: Original strand, 18739224 - 18739398
Alignment:
Q  55 ttaagcctttttctccaattgaattccacggctttaacttcatcatataagacagagaacaagctacctttctccatgtactcgtagattaaaaacatga 154  Q
    |||| |||||| ||||| |||||||||||| |||| || |||||||| ||||||||||||||||| |||||||||||||| |  ||||| ||||||||||    
T  18739224 ttaacccttttcctccacttgaattccacgacttttacatcatcatacaagacagagaacaagcttcctttctccatgtattgatagatcaaaaacatga 18739323  T
Q  155 ttcttttgtgcaagcagaatccataaagcttcacgatatttcggtgctttatttttgataatattctcgcttcat 229  Q
    |||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||| ||||||    
T  18739324 ttcttttgtgcaagcagaatccataaagcttcacaatatgtcggtgctttatttctgataatattctcacttcat 18739398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 55 - 229
Target Start/End: Original strand, 18744188 - 18744362
Alignment:
Q  55 ttaagcctttttctccaattgaattccacggctttaacttcatcatataagacagagaacaagctacctttctccatgtactcgtagattaaaaacatga 154  Q
    |||| |||||| ||||| |||||||||||| |||| || |||||||| ||||||||||||||||| |||||||||||||| |  ||||| ||||||||||    
T  18744188 ttaacccttttcctccacttgaattccacgacttttacatcatcatacaagacagagaacaagcttcctttctccatgtattgatagatcaaaaacatga 18744287  T
Q  155 ttcttttgtgcaagcagaatccataaagcttcacgatatttcggtgctttatttttgataatattctcgcttcat 229  Q
    |||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||| ||||||    
T  18744288 ttcttttgtgcaagcagaatccataaagcttcacaatatgtcggtgctttatttctgataatattctcacttcat 18744362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 19 - 229
Target Start/End: Original strand, 18749113 - 18749323
Alignment:
Q  19 agatatgatagaccaaatgcaacccctttcacaacattaagcctttttctccaattgaattccacggctttaacttcatcatataagacagagaacaagc 118  Q
    |||||||| ||| |||||||||| ||||| | |   ||||  ||||||||||| |||||||||| |||||  || |||||||| ||||||||||| ||||    
T  18749113 agatatgaaagagcaaatgcaactcctttaatagtgttaactctttttctccacttgaattccatggcttctacatcatcatacaagacagagaataagc 18749212  T
Q  119 tacctttctccatgtactcgtagattaaaaacatgattcttttgtgcaagcagaatccataaagcttcacgatatttcggtgctttatttttgataatat 218  Q
    | ||| | |||||||| |  ||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |  ||||||||||| || ||| ||    
T  18749213 ttcctctatccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaatatgtttgtgctttatttctgttaaaat 18749312  T
Q  219 tctcgcttcat 229  Q
    |||| ||||||    
T  18749313 tctcacttcat 18749323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 19 - 229
Target Start/End: Original strand, 18723461 - 18723671
Alignment:
Q  19 agatatgatagaccaaatgcaacccctttcacaacattaagcctttttctccaattgaattccacggctttaacttcatcatataagacagagaacaagc 118  Q
    |||||||| ||| |||||||||| ||||| | |   ||||  ||||||||||| ||||||| || |||||  || |||||||| ||||||||||| ||||    
T  18723461 agatatgaaagagcaaatgcaactcctttaatagtgttaactctttttctccacttgaatttcatggcttctacatcatcatacaagacagagaataagc 18723560  T
Q  119 tacctttctccatgtactcgtagattaaaaacatgattcttttgtgcaagcagaatccataaagcttcacgatatttcggtgctttatttttgataatat 218  Q
    | ||| | |||||||| |  ||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |  ||||||||||| || ||| ||    
T  18723561 ttcctctatccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcactatatgtttgtgctttatttctgttaaaat 18723660  T
Q  219 tctcgcttcat 229  Q
    |||| ||||||    
T  18723661 tctcacttcat 18723671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 53 - 228
Target Start/End: Complemental strand, 19250585 - 19250411
Alignment:
Q  53 cattaagcctttttctccaattgaattccacggctttaacttcatcatataagacagagaacaagctacctttctccatgtactcgtagattaaaaacat 152  Q
    ||||||| |||||||||||||||||||||||  |||  || |||||||| || || ||||||||||| | ||| || ||||| |  ||||| ||||||||    
T  19250585 cattaagtctttttctccaattgaattccacaacttctacatcatcatacaaaaccgagaacaagcttcatttttc-atgtattgatagatcaaaaacat 19250487  T
Q  153 gattcttttgtgcaagcagaatccataaagcttcacgatatttcggtgctttatttttgataatattctcgcttca 228  Q
    ||||||||||||||||||||||||||||||||| || ||||||  ||| ||||| | ||||||||||||| |||||    
T  19250486 gattcttttgtgcaagcagaatccataaagcttaacaatatttatgtgttttatatatgataatattctcacttca 19250411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 54 - 228
Target Start/End: Original strand, 41668777 - 41668951
Alignment:
Q  54 attaagcctttttctccaattgaattccacggctttaacttcatcatataagacagagaacaagctacctttctccatgtactcg-tagattaaaaacat 152  Q
    |||||| |||||||| |||||||||||||| ||||  |  || ||||| || || |||||||| ||  |||| | |||||| ||| ||||||||||||||    
T  41668777 attaagtctttttctgcaattgaattccacagcttctaaatcctcatacaaaactgagaacaaactttcttttttcatgta-tcgatagattaaaaacat 41668875  T
Q  153 gattcttttgtgcaagcagaatccataaagcttcacgatatttcggtgctttatttttgataatattctcgcttca 228  Q
     ||||||||||||||||| |||||||||||||| || ||||||   |||||||||||| |||||||| || |||||    
T  41668876 tattcttttgtgcaagcaaaatccataaagcttaacaatatttatctgctttattttttataatattttcacttca 41668951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 7e-30; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 54 - 228
Target Start/End: Complemental strand, 36620787 - 36620613
Alignment:
Q  54 attaagcctttttctccaattgaattccacggctttaacttcatcatataagacagagaacaagctacctttctccatgtactcgtagattaaaaacatg 153  Q
    |||||| |||||||| |||||||||||||| ||||  |  || ||||| || || |||||||| ||  || | | |||||| |  |||||||||||||||    
T  36620787 attaagtctttttctgcaattgaattccacagcttctaaatcctcatacaaaaccgagaacaaactttctcttttcatgtattgatagattaaaaacatg 36620688  T
Q  154 attcttttgtgcaagcagaatccataaagcttcacgatatttcggtgctttatttttgataatattctcgcttca 228  Q
    ||||||||||||||||| |||||||||||||| || ||||||   |||||||||||||||||||||||| |||||    
T  36620687 attcttttgtgcaagcaaaatccataaagcttaacaatatttatctgctttatttttgataatattctcacttca 36620613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 142 - 228
Target Start/End: Original strand, 39102305 - 39102391
Alignment:
Q  142 attaaaaacatgattcttttgtgcaagcagaatccataaagcttcacgatatttcggtgctttatttttgataatattctcgcttca 228  Q
    |||||||||||| |||||||||||||||| |||||||||||||| || ||||||   |||||||||||||||||||||||| |||||    
T  39102305 attaaaaacatgcttcttttgtgcaagcaaaatccataaagcttaacaatatttatctgctttatttttgataatattctcacttca 39102391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 54 - 228
Target Start/End: Original strand, 8873023 - 8873198
Alignment:
Q  54 attaagcctttttctccaattgaattccacggctttaacttcatcatataagacagagaacaagctacctttctccatgtactcgtagattaaaaacatg 153  Q
    |||||| |||||||| ||||||||||||||  |||  |  || ||||| || |  |||||||| ||  |||| | |||||| |  |||||||||||||||    
T  8873023 attaagtctttttctgcaattgaattccacatcttctaaatcctcatacaaaatcgagaacaaactttcttttttcatgtattgatagattaaaaacatg 8873122  T
Q  154 attcttttgtgcaagc-agaatccataaagcttcacgatatttcggtgctttatttttgataatattctcgcttca 228  Q
    |||||||||||||||| | |||||||||||||| |  ||||||   |||||||||||| ||||||||||| |||||    
T  8873123 attcttttgtgcaagcaaaaatccataaagcttaataatatttatctgctttattttttataatattctcacttca 8873198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 7e-30; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 54 - 228
Target Start/End: Original strand, 42977703 - 42977877
Alignment:
Q  54 attaagcctttttctccaattgaattccacggctttaacttcatcatataagacagagaacaagctacctttctccatgtactcgtagattaaaaacatg 153  Q
    |||||| |||||||| ||||| |||||||| ||||  |  || ||||| || || |||||||| ||  |||| | |||||| |  |||||||||||||||    
T  42977703 attaagtctttttctgcaattaaattccacagcttctaaatcctcatacaaaaccgagaacaaactttcttttttcatgtattgatagattaaaaacatg 42977802  T
Q  154 attcttttgtgcaagcagaatccataaagcttcacgatatttcggtgctttatttttgataatattctcgcttca 228  Q
    ||||||||||||||||| |||||||||||||| || ||||||   |||||||||||||||||||||||| |||||    
T  42977803 attcttttgtgcaagcaaaatccataaagcttaacaatatttatctgctttatttttgataatattctcacttca 42977877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 139 - 228
Target Start/End: Complemental strand, 54123015 - 54122926
Alignment:
Q  139 tagattaaaaacatgattcttttgtgcaagcagaatccataaagcttcacgatatttcggtgctttatttttgataatattctcgcttca 228  Q
    |||||||||||||||||||||||||||||||| |||  ||||||||| | |||||||   |||||||||||| ||||||||||| |||||    
T  54123015 tagattaaaaacatgattcttttgtgcaagcaaaatatataaagcttaaagatatttatctgctttattttttataatattctcacttca 54122926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 54 - 228
Target Start/End: Original strand, 48712362 - 48712535
Alignment:
Q  54 attaagcctttttctccaattgaattccacggctttaacttcatcatataagacagagaacaagctacctttctccatgtactcgtagattaaaaacatg 153  Q
    |||||| |||||||| ||||||||||||||  |||  |  || ||||| || |  |||||||| ||  |||| | |||||| |  |||||| |||| |||    
T  48712362 attaagtctttttctgcaattgaattccacaacttctaaatcctcatacaaaatcgagaacaaactttcttttttcatgtattgatagattgaaaatatg 48712461  T
Q  154 attcttttgtgcaagcagaatccataaagcttcacgatatttcggtgctttatttttgataatattctcgcttca 228  Q
    ||||||||||||||||| |||||||||||||| || ||||||   || ||||||||||||||||||||| |||||    
T  48712462 attcttttgtgcaagcaaaatccataaagcttaacaatatttatctg-tttatttttgataatattctcacttca 48712535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 54 - 228
Target Start/End: Complemental strand, 31658199 - 31658025
Alignment:
Q  54 attaagcctttttctccaattgaattccacggctttaacttcatcatataagacagagaacaagctacctttctccatgtactcgtagattaaaaacatg 153  Q
    |||||| |||||||| ||||| ||||| || ||||  |  || |||||||| || |||||||| ||  |||| | |||||| |  |||||||||||||||    
T  31658199 attaagtctttttctgcaattaaattctacagcttctaaatcctcatataaaaccgagaacaaactttcttttttcatgtattgatagattaaaaacatg 31658100  T
Q  154 attcttttgtgcaagcagaatccataaagcttcacgatatttcggtgctttatttttgataatattctcgcttca 228  Q
    ||||||||||||||||| |||||||||||||| || ||||||   |||||||||||||||||||||||| |||||    
T  31658099 attcttttgtgcaagcaaaatccataaagcttaacaatatttatctgctttatttttgataatattctcacttca 31658025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 54 - 228
Target Start/End: Complemental strand, 1257993 - 1257819
Alignment:
Q  54 attaagcctttttctccaattgaattccacggctttaacttcatcatataagacagagaacaagctacctttctccatgtactcgtagattaaaaacatg 153  Q
    |||||| | |||||| |||||||||||| | ||||  |  || ||||| || || |||||||| ||  |||| | |||||| |  |||||||||||||||    
T  1257993 attaagtccttttctgcaattgaattcctcagcttctaaatcctcatacaaaaccgagaacaaactttcttttttcatgtattgatagattaaaaacatg 1257894  T
Q  154 attcttttgtgcaagcagaatccataaagcttcacgatatttcggtgctttatttttgataatattctcgcttca 228  Q
    |||||||||||||| || ||| ||||||| || || ||||||   |||||||||||||||||||||||| |||||    
T  1257893 attcttttgtgcaaacaaaattcataaagtttaacaatatttatctgctttatttttgataatattctcacttca 1257819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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