View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16292_low_5 (Length: 287)
Name: NF16292_low_5
Description: NF16292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16292_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 23 - 277
Target Start/End: Complemental strand, 45334889 - 45334635
Alignment:
| Q |
23 |
ttacagtcttcagagttggagggtaatttaactgctgtacaaaatcaaattctttcaaaattttgtttatgaaatacttagccaaacacacacttagact |
122 |
Q |
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| T |
45334889 |
ttacagtcttcagagttggagggtaatttaactgctgtacaaaatcaaattctttcaaaattttgtttatgaaatacttagccaaacacacacttagact |
45334790 |
T |
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| Q |
123 |
aattcttctatccttatggaaccatgttcttctaactaactggttgttgtttgcagggaatatttgagacatttgataaggacaggagtggcagaatcga |
222 |
Q |
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| T |
45334789 |
aattcttctatccttatggaaccatgttcttctaactaactggttgttgtttgcagggaatatttgagacatttgataaggacaggagtggcagaatcaa |
45334690 |
T |
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| Q |
223 |
ttcaattgagttgcgagatgcgctgttaagtttgggttatgctgtttctcctatg |
277 |
Q |
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| T |
45334689 |
ttcaattgagttgcgagatgcgctgttaagtttgggttatgctgtttctcctatg |
45334635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 64 - 274
Target Start/End: Complemental strand, 20789720 - 20789511
Alignment:
| Q |
64 |
aaatcaaattctttcaaaattttgtttatgaaatacttagccaaacacacacttagactaattcttctatccttatggaaccatgttcttctaactaact |
163 |
Q |
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|||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| || | | || |||||||| ||| ||||||||||||||||| |
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| T |
20789720 |
aaatcatattctttcaaaattatgtttatgaaatacttagccaaacacacacttagacaaactatactgtccttatgaaacagtgttcttctaactaact |
20789621 |
T |
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| Q |
164 |
ggttgttgtttgcagggaatatttgagacatttgataaggacaggagtggcagaatcgattcaattgagttgcgagatgcgctgttaagtttgggttatg |
263 |
Q |
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| T |
20789620 |
ggttgttgttt-cagggaatatttgagagatttgacaaggataggagtggcaaaattgattcaaatgagttgcgagatgcgctgttgagtttgggttatg |
20789522 |
T |
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| Q |
264 |
ctgtttctcct |
274 |
Q |
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||||||||||| |
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| T |
20789521 |
ctgtttctcct |
20789511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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