View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16293_high_1 (Length: 434)
Name: NF16293_high_1
Description: NF16293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16293_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 337; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 19 - 425
Target Start/End: Complemental strand, 38857083 - 38856673
Alignment:
| Q |
19 |
tttaaaggattgataaagatttatttctttgttcaataacacagggaataacaagtttcttgaaatgcatttttgatccatactttgtatttttctaacc |
118 |
Q |
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| T |
38857083 |
tttaaaggattgataaagatttatttctttgttcaataacacagggaataacaagtttcttgaaatgcatttttgatccatacttggtatttttttaacc |
38856984 |
T |
|
| Q |
119 |
gagactcttacgtagagaaatcagtgtttctatatgctatat----tggtgttgtatatatgtatttagtgcaaataatagttccttgcccaaaaattta |
214 |
Q |
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| T |
38856983 |
gagacccttacataaagaaaccagtgtttctatatgctatatatattggtgttgtatatatgtatttagtgcaaataatagttccttgcccaaaaattta |
38856884 |
T |
|
| Q |
215 |
gtaaaaaagcataactacttactttgttatgatcattggtttgtggtaccttctgacgttcactgttaatggcacctctttttgattaaaaaataatgta |
314 |
Q |
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| T |
38856883 |
gtaaaaaagcattactacttactttgttatgatcattggtttgtggtaccttctgacgttcactgttaacggcacctctttttgattaaaaaataatgta |
38856784 |
T |
|
| Q |
315 |
aaagccattagcttgnnnnnnntagcagtaatggtgttatacatacgattatgtcatcctagcacaaccatattaacaagtttcgcagctgatttggcca |
414 |
Q |
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| T |
38856783 |
aaagccattagcttgaaaaaaatagcagttatggtgttatacatacgattatgtcatcctagcacaaccatattaacaagtttcgcagctgatttggcca |
38856684 |
T |
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| Q |
415 |
aagagaataat |
425 |
Q |
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| T |
38856683 |
aagagaataat |
38856673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 19 - 306
Target Start/End: Complemental strand, 37690350 - 37690061
Alignment:
| Q |
19 |
tttaaaggattgataaagatttatttctttgttcaataacacagggaataacaagtttcttgaaatgcatttttgatccatactttgtatttttctaacc |
118 |
Q |
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||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |
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| T |
37690350 |
tttaatggattgataaagatttattattttgttcaataacacagggaataacaagtttcttgaaatgcatttt-gatccatactttgtatttttctaatc |
37690252 |
T |
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| Q |
119 |
gagactcttacgtagagaaatcagtgtttctatatgctatattggtgttgtatatatgtatttagtgcaaataatagttccttgcccaaaaatttagtaa |
218 |
Q |
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|| |||||| | |||||| |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
37690251 |
gaatttcttacatggagaaaccagtgtttctatatgctatatttgtgttgcatatatgtatttagtgcaaataatagttccttacccaaaaatttagtaa |
37690152 |
T |
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| Q |
219 |
aaaagcataactacttactttgttatgatcattggtttgtggtaccttctgacgttcactgtt---aatggcacctctttttgattaaaaa |
306 |
Q |
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| T |
37690151 |
aaaagcatcacttcttactttattatgatctttggtttgtggtaccttctgtcgttcactgttaacaacggcaccactttttgattaaaaa |
37690061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 285 - 425
Target Start/End: Complemental strand, 37690051 - 37689911
Alignment:
| Q |
285 |
ggcacctctttttgattaaaaaataatgtaaaagccattagcttgnnnnnnntagcagtaatggtgttatacatacgattatgtcatcctagcacaacca |
384 |
Q |
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|||||| ||||||||||||||| |||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
37690051 |
ggcaccactttttgattaaaaagtaatgtaaaaaccattagcttgaaaaaaatagcagttatggtgttatacatacgattatgtcatcctagcacaacca |
37689952 |
T |
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| Q |
385 |
tattaacaagtttcgcagctgatttggccaaagagaataat |
425 |
Q |
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| T |
37689951 |
tattaacaagtttcggagctgatttggccaaagagaataat |
37689911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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