View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16293_high_2 (Length: 412)
Name: NF16293_high_2
Description: NF16293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16293_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 373; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 8 - 396
Target Start/End: Complemental strand, 32658250 - 32657862
Alignment:
| Q |
8 |
aaattatacttctaaacaaactatcctaaatcatcctaatcatagagcgtttgagtatttgcatgagcgtatatattgtcactatttgttggacctgcag |
107 |
Q |
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| T |
32658250 |
aaattatacttctaaacaaactatcctaaatcatcctaatcatagagcgtttgagtatttgcatgagcgtatatattgtcactatttgttggacctgcag |
32658151 |
T |
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| Q |
108 |
tgatcatcactagaccttagaaatttaaatcgatcggggacccaattttagtccaagattgaacactgattaagctaaatgtactctacggtttacttta |
207 |
Q |
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| T |
32658150 |
tcatcatcactagaccttagaaatttaaatcgatcggggacccaattttagtccaagattgaacactgattaagctacatgtactctacggtttacttta |
32658051 |
T |
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| Q |
208 |
ttaatcatcacacataagtttctatataacaagatgtatccatgttcttctactagacagtagtacacttggtccatatagtttggcattgatggctcaa |
307 |
Q |
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| T |
32658050 |
ttaatcatcacacataagtttctatataacaagatgtatccatgttcttctactagacagtagtacacttggtccatatagtttggcattgatggctcga |
32657951 |
T |
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| Q |
308 |
tgattcaagcttgagttcatcaactatatgttttaagatgttttattgttggtccttggtacatgtgattgatctttagacgaaggaat |
396 |
Q |
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| T |
32657950 |
tgattcaagcttgagttcatcaactatatgttttaagatgttttatggttggtccttggtacatgtgattgatctttagacgaaggaat |
32657862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 276 - 340
Target Start/End: Complemental strand, 32654014 - 32653951
Alignment:
| Q |
276 |
ttggtccatatagtttggcattgatggctcaatgattcaagcttgagttcatcaactatatgttt |
340 |
Q |
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| T |
32654014 |
ttggtccagatagtttggcattgatgactagacgattgaagcttgagttca-caactagatgttt |
32653951 |
T |
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