View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16294_low_1 (Length: 531)
Name: NF16294_low_1
Description: NF16294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16294_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 453; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 18 - 518
Target Start/End: Original strand, 21829549 - 21830049
Alignment:
| Q |
18 |
gattctaccttcacatttgatcccagccatagtgtcctataacctagataatcaatagactcctccctttaaaggaggctagcaaactaacaatctcatc |
117 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
21829549 |
gattctaccttcacatttgatcccagacatagtgtcctataacctagataaccaatagactcctccctttaaaggaggctaccaaactaacaatctcatc |
21829648 |
T |
|
| Q |
118 |
tgatacctcctagatgcaattcaacaatcatcaaagataattgtagcccaaggtaagtgacaggtctgcgctaagaacaggaagatgcatatcccccact |
217 |
Q |
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|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21829649 |
tgatacattctagatgcaattcaacaatcatcaaagataattgtagcccaaggtaagtgacaggtctgcgctaagaacaggaagatgcatatcccccact |
21829748 |
T |
|
| Q |
218 |
aataaggttaattagaaatcacacgcactccaaaatcacactagaacatggactgttggcgaaaagacacgacattttttgtccccgaaagatttagagt |
317 |
Q |
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|||||||||||||||||||| ||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
21829749 |
aataaggttaattagaaatcgcacgcacaccaaaaacacactagaacatggaccgttggcgaaaagacacgacattttttgtccccgaaagatttaaagt |
21829848 |
T |
|
| Q |
318 |
ctaagacccccatcatcgtccaccgtcctagtcccctcaacgccataatgttaaatactatatgaaacctccaaccctccctcccctcgctcctatgggg |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21829849 |
ctaagacccccatcatcgtccaccgtcctagtcccctcaacgccataatgttaaatactatatgaaacctccaaccctccctcccctcgctcctatgggg |
21829948 |
T |
|
| Q |
418 |
catggagtttgttgtaatgatgacaattctccattgagacgttcccattgcaggtcattatcttatgagatttcctcgtatgaagatgatctcccttaga |
517 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21829949 |
catggagtttgttgtaatgatgaaaattctccattgagacgttcctattgcaggtcattatcttatgagatttcctcgtatgaagatgatctcccttaga |
21830048 |
T |
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| Q |
518 |
a |
518 |
Q |
| |
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| T |
21830049 |
a |
21830049 |
T |
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