View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16294_low_3 (Length: 356)
Name: NF16294_low_3
Description: NF16294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16294_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 20 - 335
Target Start/End: Complemental strand, 48638954 - 48638644
Alignment:
| Q |
20 |
cgaagcttatctaggtaatcttataagctagtcaatatcaagtgggatcctcctcaaaagtacttcattgtgaataatgaagataatgtaattatagttg |
119 |
Q |
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| T |
48638954 |
cgaagcttatctaggtaatcttataagctagtcaatatcaagtgggatcctcctcaaaagtacttcattgtgaataatgaagataatgtaattatagttg |
48638855 |
T |
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| Q |
120 |
taacgagagtaaaaactgaaaattaaactaggtttgtagaggcgtatgcagtgagaaatcacgccgcccctacatgtacagagaccaattccaatttgct |
219 |
Q |
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| T |
48638854 |
taacgagagtgaaaactgaaaa-----ctaggtttgtagaggcgtatgcagtgagaaatcacgccgcccctacatgtacagagaccaattccaatttgct |
48638760 |
T |
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| Q |
220 |
taatacaccagtttgtattgctttcaaagttatttttggtttgaccctttttatctagtgtttgtcggagtttgaatctcaaatcttacatatattatgg |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||||| |
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| T |
48638759 |
taatacaccagtttgtattgctttcaaagttatttttggtttgaccctttttatctaatgtttgtcggagtttgaatctcaaatcttgcttatattatgg |
48638660 |
T |
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| Q |
320 |
tttgtagctaagttca |
335 |
Q |
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| T |
48638659 |
tttgtagctaagttca |
48638644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 283 - 318
Target Start/End: Original strand, 41939104 - 41939139
Alignment:
| Q |
283 |
gtcggagtttgaatctcaaatcttacatatattatg |
318 |
Q |
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| T |
41939104 |
gtcggagtttgaatctcaaaccttacatatattatg |
41939139 |
T |
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