View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16294_low_5 (Length: 305)

Name: NF16294_low_5
Description: NF16294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16294_low_5
NF16294_low_5
[»] chr5 (17 HSPs)
chr5 (21-263)||(13855925-13856167)
chr5 (25-287)||(10212213-10212475)
chr5 (25-286)||(10105801-10106062)
chr5 (25-256)||(10109214-10109445)
chr5 (25-264)||(10209685-10209924)
chr5 (24-287)||(10102715-10102981)
chr5 (21-164)||(12104608-12104751)
chr5 (34-212)||(12109354-12109533)
chr5 (24-175)||(9674763-9674918)
chr5 (115-256)||(9660199-9660340)
chr5 (227-288)||(10215844-10215905)
chr5 (115-193)||(10215906-10215984)
chr5 (14-75)||(10215979-10216040)
chr5 (113-167)||(37278735-37278789)
chr5 (112-171)||(3467667-3467726)
chr5 (35-85)||(10219135-10219185)
chr5 (183-263)||(9674059-9674140)
[»] chr8 (5 HSPs)
chr8 (112-256)||(31555089-31555233)
chr8 (112-256)||(31878236-31878380)
chr8 (34-239)||(31558191-31558396)
chr8 (119-166)||(13568429-13568476)
chr8 (112-221)||(4042194-4042303)
[»] chr1 (11 HSPs)
chr1 (42-216)||(10542321-10542496)
chr1 (109-240)||(42202365-42202496)
chr1 (109-240)||(42211233-42211364)
chr1 (113-247)||(45151994-45152128)
chr1 (108-240)||(2176292-2176424)
chr1 (109-217)||(42409594-42409702)
chr1 (112-247)||(45316380-45316515)
chr1 (112-176)||(43014366-43014430)
chr1 (113-223)||(51795018-51795128)
chr1 (109-175)||(42217273-42217339)
chr1 (111-171)||(42417640-42417700)
[»] chr7 (6 HSPs)
chr7 (112-256)||(3649475-3649619)
chr7 (112-256)||(3647026-3647170)
chr7 (121-256)||(3657601-3657736)
chr7 (117-170)||(3641211-3641264)
chr7 (184-223)||(3656176-3656215)
chr7 (129-176)||(19523283-19523330)
[»] chr4 (6 HSPs)
chr4 (108-214)||(25698804-25698910)
chr4 (112-256)||(17889422-17889566)
chr4 (127-208)||(46362507-46362588)
chr4 (131-179)||(36790854-36790902)
chr4 (112-176)||(49588194-49588258)
chr4 (126-166)||(20918685-20918725)
[»] chr3 (2 HSPs)
chr3 (109-222)||(46446211-46446324)
chr3 (112-251)||(21884021-21884160)
[»] chr6 (2 HSPs)
chr6 (112-176)||(33891592-33891656)
chr6 (113-167)||(27868671-27868725)
[»] chr2 (4 HSPs)
chr2 (121-215)||(26568347-26568441)
chr2 (107-176)||(5900520-5900589)
chr2 (139-176)||(43633443-43633480)
chr2 (114-167)||(2341338-2341391)


Alignment Details
Target: chr5 (Bit Score: 155; Significance: 3e-82; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 21 - 263
Target Start/End: Original strand, 13855925 - 13856167
Alignment:
Q  21 gtgggtgtctgataaagtccaacatcgaccaattcataaactaaactatgcagctcacatataaattgacagcacctctacctccttaaagcacggagcc 120  Q
    |||||||||||||| ||||| ||||| |||||||||||||||||||||||||| |||||||||||  || || ||||||||||| |  ||||||||||||    
T  13855925 gtgggtgtctgatagagtcccacatcaaccaattcataaactaaactatgcagttcacatataaaaagaaaggacctctacctcttacaagcacggagcc 13856024  T
Q  121 gtgtgttgatcacatagcgaactattctttcgccttttactaaagaataccgtgtgagcattacaattagcggcatacgctagtttttggaagagtcttc 220  Q
    | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||| ||||||||||| |||||| ||    
T  13856025 gagtgatgatcacatagcgaactattctttcgccttttactaaagaataccgtgtgagcgttgctattagcggcatacactagtttttgggagagtcctc 13856124  T
Q  221 tttacatagggctctgcaattttagttcaatattttcctattc 263  Q
    || ||| |||||| |||||||||||||||||||||||||||||    
T  13856125 ttcacagagggctttgcaattttagttcaatattttcctattc 13856167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 25 - 287
Target Start/End: Complemental strand, 10212475 - 10212213
Alignment:
Q  25 gtgtctgataaagtccaacatcgaccaattcataaactaaactatgcagctcacatataaattgacagcacctctacctccttaaagcacggagccgtgt 124  Q
    ||||||||||| |||| ||||| |||||| ||||||||||||||||| | ||||||||||| ||| |  ||||||||||||   | | ||||||||||||    
T  10212475 gtgtctgataatgtcccacatctaccaatgcataaactaaactatgctgatcacatataaaatgaaatgacctctacctccaataggtacggagccgtgt 10212376  T
Q  125 gttgatcacatagcgaactattctttcgccttttactaaagaataccgtgtgagcattacaattagcggcatacgctagtttttggaagagtcttcttta 224  Q
    | |||||||||||||||||||||||||||||||||||||||||||| |||||||  | ||||||||||||||||||||||||||||||||||| || | |    
T  10212375 gatgatcacatagcgaactattctttcgccttttactaaagaatactgtgtgagtgtcacaattagcggcatacgctagtttttggaagagtcctcctca 10212276  T
Q  225 catagggctctgcaattttagttcaatattttcctattcctatttttatgtggttactatgtt 287  Q
    |  | ||||||||||||||||| |||||||||| ||||| | ||||| |||||||||||||||    
T  10212275 ccgaaggctctgcaattttagtacaatattttcttattcttgtttttttgtggttactatgtt 10212213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 25 - 286
Target Start/End: Original strand, 10105801 - 10106062
Alignment:
Q  25 gtgtctgataaagtccaacatcgaccaattcataaactaaactatgcagctcacatataaattgacagcacctctacctccttaaagcacggagccgtgt 124  Q
    |||||||| ||||||| |||||| ||| |||||||||||||||||||||||  |||||||| ||| || | |||||| |  || ||||||||||||||||    
T  10105801 gtgtctgacaaagtcccacatcgcccagttcataaactaaactatgcagctttcatataaaatgaaaggatctctactttttttaagcacggagccgtgt 10105900  T
Q  125 gttgatcacatagcgaactattctttcgccttttactaaagaataccgtgtgagcattacaattagcggcatacgctagtttttggaagagtcttcttta 224  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||| ||||||    
T  10105901 gatgatcacatagcgaactattctttcgccttttactaaagaataccgtgtgagcgtcataattagcggcatacgctagtttttggaagagtcctcttta 10106000  T
Q  225 catagggctctgcaattttagttcaatattttcctattcctatttttatgtggttactatgt 286  Q
       |||||||||||| ||||||||||| ||||  ||||| | |||| |||| ||| ||||||    
T  10106001 ttgagggctctgcaaatttagttcaatttttttgtattctttttttaatgtagttgctatgt 10106062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 25 - 256
Target Start/End: Original strand, 10109214 - 10109445
Alignment:
Q  25 gtgtctgataaagtccaacatcgaccaattcataaactaaactatgcagctcacatataaattgacagcacctctacctccttaa-agcacggagccgtg 123  Q
    |||||||||||||||| |||||| |||||||||||||||||||||||||||  ||||||||  || || |||||| |||  | || | ||||||||||||    
T  10109214 gtgtctgataaagtcccacatcgcccaattcataaactaaactatgcagcttgcatataaaaagatagaacctct-ccttgtaaagatcacggagccgtg 10109312  T
Q  124 tgttgatcacatagcgaactattctttcgccttttactaaagaataccgtgtgagcattacaattagcggcatacgctagtttttggaagagtcttcttt 223  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||    
T  10109313 tgatgatcacatagcgaactattctttcgccttttactaaagaataccgtgtgagcgtcacaattagcggcatacgctagtttttggaagagtcctcttt 10109412  T
Q  224 acatagggctctgcaattttagttcaatatttt 256  Q
    |   |||||||||||||||||||| ||| ||||    
T  10109413 atggagggctctgcaattttagttaaatttttt 10109445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 25 - 264
Target Start/End: Complemental strand, 10209924 - 10209685
Alignment:
Q  25 gtgtctgataaagtccaacatcgaccaattcataaactaaactatgcagctcacatataaattgacagcacctctacctccttaaagcacggagccgtgt 124  Q
    |||||| ||||||||| |||||| |||||||||||||||||||||||||||  ||||||||  || || |||| | | |  | ||| |||||||||||||    
T  10209924 gtgtctaataaagtcccacatcgcccaattcataaactaaactatgcagcttgcatataaaaagataggacctatccttgttaaaatcacggagccgtgt 10209825  T
Q  125 gttgatcacatagcgaactattctttcgccttttactaaagaataccgtgtgagcattacaattagcggcatacgctagtttttggaagagtcttcttta 224  Q
    | ||| ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| || |||||||| ||||||||||||||||  ||||||    
T  10209824 gatgaacacatagcgaactattctttcgccttttactaaagaataccgtgtgagcgtcacaatgagtggcatacgttagtttttggaagagttctcttta 10209725  T
Q  225 catagggctctgcaattttagttcaatattttcctattcc 264  Q
       ||||||||||||||||||||||||  ||| |||||||    
T  10209724 tggagggctctgcaattttagttcaatgattttctattcc 10209685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 24 - 287
Target Start/End: Original strand, 10102715 - 10102981
Alignment:
Q  24 ggtgtctgataaagtccaacatcgaccaattcataaactaaactatgcagctcacatataaattgacagcacctctacctccttaaagc--acggagccg 121  Q
    |||||| |||||| ||| |||||||||||||||||||||||||||||| ||| || ||||||  || |  ||||| | ||  |||||    ||||||| |    
T  10102715 ggtgtcggataaactcccacatcgaccaattcataaactaaactatgctgcttacttataaaacgaaaagacctc-agcttgttaaaatttacggagctg 10102813  T
Q  122 tgtgttgatcacatagcgaactattctttcgccttttactaaagaataccgtgtgagcattacaattagcggcatacgctagtttttggaagagtcttct 221  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||||||||| |||    
T  10102814 tgtgatgatcacatagcgaactattctttcgccttttactaaagaataccgtgtgagcgtcacaattagcggcatacactagtttttggaagagtcctct 10102913  T
Q  222 ttacatagggctctgcaattttagttcaatattttcctattc--ctatttttatgtggttactatgtt 287  Q
    | |   |||||||||||| ||||||||||||||||  |||||   ||||||||||||||| |||||||    
T  10102914 tcattgagggctctgcaaatttagttcaatatttttgtattcttttatttttatgtggttgctatgtt 10102981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 21 - 164
Target Start/End: Complemental strand, 12104751 - 12104608
Alignment:
Q  21 gtgggtgtctgataaagtccaacatcgaccaattcataaactaaactatgcagctcacatataaattgacagcacctctacctccttaaagcacggagcc 120  Q
    |||||||||| ||||||||| |||||||||||||||||||||||| |||||||||||||||||||  || || |||||||| || |  ||||| ||||||    
T  12104751 gtgggtgtctaataaagtcccacatcgaccaattcataaactaaattatgcagctcacatataaaaagataggacctctacttcttgtaagcatggagcc 12104652  T
Q  121 gtgtgttgatcacatagcgaactattctttcgccttttactaaa 164  Q
    ||||| ||||||||||||||||||||||||||||||||||||||    
T  12104651 gtgtgatgatcacatagcgaactattctttcgccttttactaaa 12104608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 34 - 212
Target Start/End: Complemental strand, 12109533 - 12109354
Alignment:
Q  34 aaagtccaacatcgaccaattcataaact-aaactatgcagctcacatataaattgacagcacctctacctccttaaagcacggagccgtgtgttgatca 132  Q
    ||||||| |||||||||||| |||||||| |||||| ||  |||| ||||||| ||| |  ||||||||||||   |||||||||||||  || ||||||    
T  12109533 aaagtcccacatcgaccaatgcataaactgaaactaagcttctcatatataaaatgaaatgacctctacctccaataagcacggagccgcctgatgatca 12109434  T
Q  133 catagcgaactattctttcgccttttactaaagaataccgtgtgagcattacaattagcggcatacgctagtttttggaa 212  Q
    |||||| |||||||||||||||||||||||||||||||||||||||| | |||||| | |||||||||||||||||||||    
T  12109433 catagcaaactattctttcgccttttactaaagaataccgtgtgagcgtcacaatttgtggcatacgctagtttttggaa 12109354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 24 - 175
Target Start/End: Complemental strand, 9674918 - 9674763
Alignment:
Q  24 ggtgtctga-taaagtccaacatcgaccaattcataaactaaactatgcagctcacatataaattgacagcacctctacctccttaaagcacggagccg- 121  Q
    ||||||||| |||||||| |||||  ||||| ||||| ||||||||||| ||||||||||||| | | || ||||||||||  ||||||||||||||||     
T  9674918 ggtgtctgactaaagtcccacatcctccaatgcataagctaaactatgctgctcacatataaaattaaagaacctctacctttttaaagcacggagccgc 9674819  T
Q  122 --tgtgttgatcacatagcgaactattctttcgccttttactaaagaataccgtgt 175  Q
      |||| |||||||| || |||||||||||||||||||||||||||||||||||||    
T  9674818 cgtgtgatgatcacaaagtgaactattctttcgccttttactaaagaataccgtgt 9674763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 115 - 256
Target Start/End: Complemental strand, 9660340 - 9660199
Alignment:
Q  115 ggagccgtgtgttgatcacatagcgaactattctttcgccttttactaaagaataccgtgtgagcattacaattagcggcatacgctagtttttggaaga 214  Q
    |||||| |||| |||||||||||||||||||| ||| ||||||||||||||||||| |||||| | | ||||||||| ||||| || |||||||||||||    
T  9660340 ggagccttgtgatgatcacatagcgaactattattttgccttttactaaagaatactgtgtgaacgtcacaattagcagcatatgccagtttttggaaga 9660241  T
Q  215 gtcttctttacatagggctctgcaattttagttcaatatttt 256  Q
    ||| | || |   || ||||||||||||||||||||||||||    
T  9660240 gtcctattcatggagtgctctgcaattttagttcaatatttt 9660199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 227 - 288
Target Start/End: Complemental strand, 10215905 - 10215844
Alignment:
Q  227 tagggctctgcaattttagttcaatattttcctattcctatttttatgtggttactatgttt 288  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  10215905 tagggctctgcaattttagttcaatattttcctattcctatttttatgtggtaactatgttt 10215844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 115 - 193
Target Start/End: Complemental strand, 10215984 - 10215906
Alignment:
Q  115 ggagccgtgtgttgatcacatagcgaactattctttcgccttttactaaagaataccgtgtgagcattacaattagcgg 193  Q
    ||||| |||||||||||||||||  ||||||||||| |||||||||||||||||||| ||||||  |||||||||||||    
T  10215984 ggagctgtgtgttgatcacatagtaaactattcttttgccttttactaaagaataccttgtgagtgttacaattagcgg 10215906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 10216040 - 10215979
Alignment:
Q  14 agaacctgtgggtgtctgataaagtccaacatcgaccaattcataaactaaactatgcagct 75  Q
    ||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||    
T  10216040 agaacatgtgggtgtctgataaagtcccacatcgaccaattcagaaactaaactatggagct 10215979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 113 - 167
Target Start/End: Complemental strand, 37278789 - 37278735
Alignment:
Q  113 acggagccgtgtgttgatcacatagcgaactattctttcgccttttactaaagaa 167  Q
    ||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||    
T  37278789 acggagccgtgtgatgagcacataacgaactattctttcgccttttactaaagaa 37278735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 112 - 171
Target Start/End: Complemental strand, 3467726 - 3467667
Alignment:
Q  112 cacggagccgtgtgttgatcacatagcgaactattctttcgccttttactaaagaatacc 171  Q
    |||| ||||||||| ||| | || ||| ||||||||||||||||||||||||||||||||    
T  3467726 cacgcagccgtgtgatgagctcaaagcaaactattctttcgccttttactaaagaatacc 3467667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 85
Target Start/End: Complemental strand, 10219185 - 10219135
Alignment:
Q  35 aagtccaacatcgaccaattcataaactaaactatgcagctcacatataaa 85  Q
    |||||| ||||| |||||||||||||||||||||||| ||| || ||||||    
T  10219185 aagtcccacatcaaccaattcataaactaaactatgctgcttacttataaa 10219135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 263
Target Start/End: Complemental strand, 9674140 - 9674059
Alignment:
Q  183 acaattagcggcatacgctagtttttgg-aagagtcttctttacatagggctctgcaattttagttcaatattttcctattc 263  Q
    |||||| |||||||| |||||||||||| ||||||| |||| |   ||||||||||||| ||||| |||| |||||| ||||    
T  9674140 acaatttgcggcatatgctagtttttggaaagagtcatcttcattgagggctctgcaatattagtacaatgttttcccattc 9674059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 109; Significance: 8e-55; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 112 - 256
Target Start/End: Complemental strand, 31555233 - 31555089
Alignment:
Q  112 cacggagccgtgtgttgatcacatagcgaactattctttcgccttttactaaagaataccgtgtgagcattacaattagcggcatacgctagtttttgga 211  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  31555233 cacggagccgtgtgatgatcacatagcgaactattctttcgccttttactaaagaataccgtgtgagcgtcacaattagcggcatacgctagtttttgga 31555134  T
Q  212 agagtcttctttacatagggctctgcaattttagttcaatatttt 256  Q
    |||||||||||||   ||||||||||||| |||||| ||| ||||    
T  31555133 agagtcttctttattgagggctctgcaatattagtttaatttttt 31555089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 112 - 256
Target Start/End: Original strand, 31878236 - 31878380
Alignment:
Q  112 cacggagccgtgtgttgatcacatagcgaactattctttcgccttttactaaagaataccgtgtgagcattacaattagcggcatacgctagtttttgga 211  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  31878236 cacggagccgtgtgatgatcacatagcgaactattctttcgccttttactaaagaataccgtgtgagcgtcacaattagcggcatacgctagtttttgga 31878335  T
Q  212 agagtcttctttacatagggctctgcaattttagttcaatatttt 256  Q
    |||||||||||||   ||||||||||||| |||||| ||| ||||    
T  31878336 agagtcttctttattgagggctctgcaatattagtttaatttttt 31878380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 34 - 239
Target Start/End: Complemental strand, 31558396 - 31558191
Alignment:
Q  34 aaagtccaacatcgaccaattcataaactaaactatgcagctcacatataaattgacagcacctctacctccttaaagcacggagccgtgtgttgatcac 133  Q
    ||||||| |||||| ||||| |||||||  ||| | || |||  |||||||| ||| ||||| |||||||  |  ||||| ||||||||||| |||||||    
T  31558396 aaagtcccacatcggccaatgcataaacccaaccaagctgcttgcatataaactgaaagcacttctaccttttataagcatggagccgtgtgatgatcac 31558297  T
Q  134 atagcgaactattctttcgccttttactaaagaataccgtgtgagcattacaattagcggcatacgctagtttttggaagagtcttctttacatagggct 233  Q
    |||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||| |||||||| |||||||| ||| ||   ||||||    
T  31558296 atagcgaactattctttcgccttttactaaagaataccgtgtgaacgtcacaattagcggcatacgttagtttttagaagagtcctctatattgagggct 31558197  T
Q  234 ctgcaa 239  Q
    ||||||    
T  31558196 ctgcaa 31558191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 119 - 166
Target Start/End: Complemental strand, 13568476 - 13568429
Alignment:
Q  119 ccgtgtgttgatcacatagcgaactattctttcgccttttactaaaga 166  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||||    
T  13568476 ccgtgtgataatcacatagcgaactattctttcgccttttactaaaga 13568429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 112 - 221
Target Start/End: Complemental strand, 4042303 - 4042194
Alignment:
Q  112 cacggagccgtgtgttgatcacatagcgaactattctttcgccttttactaaagaataccgtgtgagcattacaattagcggcatacgctagtttttgga 211  Q
    |||| ||||||||| ||| | || ||| |||||||||||||||||| |||||||||||| ||| |  | | || |||| ||||||| || | ||||||||    
T  4042303 cacgcagccgtgtgatgagctcaaagcaaactattctttcgcctttgactaaagaatactgtgggctcgtcactattaacggcatatgccaatttttgga 4042204  T
Q  212 agagtcttct 221  Q
    ||||||||||    
T  4042203 agagtcttct 4042194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 104; Significance: 7e-52; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 42 - 216
Target Start/End: Original strand, 10542321 - 10542496
Alignment:
Q  42 acatcgaccaattcataaactaaactatgcagctcacatataaattgacagcacctctacctcct-taaagcacggagccgtgtgttgatcacatagcga 140  Q
    |||||||| ||| ||| |||| ||||| || ||||||||||||| ||| || || |||| |   | ||||||||||||||||||| ||||||||||||||    
T  10542321 acatcgactaatacatcaacttaactaagctgctcacatataaaatgaaaggacatctaacagttataaagcacggagccgtgtgatgatcacatagcga 10542420  T
Q  141 actattctttcgccttttactaaagaataccgtgtgagcattacaattagcggcatacgctagtttttggaagagt 216  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  10542421 actattctttcgccttttactaaagaataccgtgtgagcgttacaattagcggcatacgctagtttttggaagagt 10542496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 109 - 240
Target Start/End: Complemental strand, 42202496 - 42202365
Alignment:
Q  109 aagcacggagccgtgtgttgatcacatagcgaactattctttcgccttttactaaagaataccgtgtgagcattacaattagcggcatacgctagttttt 208  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| | ||| ||||||||||||||||||||||    
T  42202496 aagcacggagccgtgtgttgatgacatagcgaactattctttcgccttttactaaagaataccgtgtcagcgtcacatttagcggcatacgctagttttt 42202397  T
Q  209 ggaagagtcttctttacatagggctctgcaat 240  Q
    |||||||||||||||    |||||||||||||    
T  42202396 ggaagagtcttctttttggagggctctgcaat 42202365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 109 - 240
Target Start/End: Complemental strand, 42211364 - 42211233
Alignment:
Q  109 aagcacggagccgtgtgttgatcacatagcgaactattctttcgccttttactaaagaataccgtgtgagcattacaattagcggcatacgctagttttt 208  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| | ||| ||||||||||||||||||||||    
T  42211364 aagcacggagccgtgtgttgatgacatagcgaactattctttcgccttttactaaagaataccgtgtcagcgtcacatttagcggcatacgctagttttt 42211265  T
Q  209 ggaagagtcttctttacatagggctctgcaat 240  Q
    |||||||||||||||    |||||||||||||    
T  42211264 ggaagagtcttctttttggagggctctgcaat 42211233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 113 - 247
Target Start/End: Original strand, 45151994 - 45152128
Alignment:
Q  113 acggagccgtgtgttgatcacatagcgaactattctttcgccttttactaaagaataccgtgtgagcattacaattagcggcatacgctagtttttggaa 212  Q
    ||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||| ||  | ||| ||||||||||||||||||||||||||    
T  45151994 acggagccgtgtgataatgacatagcgaactattctttcgccttttactaaagaataccgtgtcagtgtcacatttagcggcatacgctagtttttggaa 45152093  T
Q  213 gagtcttctttacatagggctctgcaattttagtt 247  Q
    ||||| |||||||  ||||||||||||| ||||||    
T  45152094 gagtcctctttacggagggctctgcaatattagtt 45152128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 108 - 240
Target Start/End: Complemental strand, 2176424 - 2176292
Alignment:
Q  108 aaagcacggagccgtgtgttgatcacatagcgaactattctttcgccttttactaaagaataccgtgtgagcattacaattagcggcatacgctagtttt 207  Q
    ||||||||||| |||||| | || |||||||||||||||||||||||||||||||||||||||||||| ||  | ||| |||||||||||||||||||||    
T  2176424 aaagcacggagacgtgtgataatgacatagcgaactattctttcgccttttactaaagaataccgtgtcagtgtcacatttagcggcatacgctagtttt 2176325  T
Q  208 tggaagagtcttctttacatagggctctgcaat 240  Q
    |||||||||||| || ||  ||| |||||||||    
T  2176324 tggaagagtctttttaacggaggactctgcaat 2176292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 109 - 217
Target Start/End: Original strand, 42409594 - 42409702
Alignment:
Q  109 aagcacggagccgtgtgttgatcacatagcgaactattctttcgccttttactaaagaataccgtgtgagcattacaattagcggcatacgctagttttt 208  Q
    ||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||| | ||| ||| || |||||| ||||||||    
T  42409594 aagcacggagctgtgtgatgatgacatagcgaactattctttcgccttttactaaagaataccgtgtcagcgtcacatttaacgacatacgttagttttt 42409693  T
Q  209 ggaagagtc 217  Q
    |||||||||    
T  42409694 ggaagagtc 42409702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 112 - 247
Target Start/End: Complemental strand, 45316515 - 45316380
Alignment:
Q  112 cacggagccgtgtgttgatcacatagcgaactattctttcgccttttactaaagaataccgtgtgagcattacaattagcggcatacgctagtttttgga 211  Q
    |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| | | | ||  ||| ||||||||| |||||||||||    
T  45316515 cacggagccgtgtgatgatgacatagcgaactattctttcgccttttactaaagaataccgtgtcaacgtcacttttaacggcatacgttagtttttgga 45316416  T
Q  212 agagtcttctttacatagggctctgcaattttagtt 247  Q
    |||| | |||| |   ||||||||||||| ||||||    
T  45316415 agagccctcttaattgagggctctgcaatattagtt 45316380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 112 - 176
Target Start/End: Complemental strand, 43014430 - 43014366
Alignment:
Q  112 cacggagccgtgtgttgatcacatagcgaactattctttcgccttttactaaagaataccgtgtg 176  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  43014430 cacggagccgtgtgatgagcacatagcgaactattctttcgccttttactaaagaataccgtgtg 43014366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 113 - 223
Target Start/End: Original strand, 51795018 - 51795128
Alignment:
Q  113 acggagccgtgtgttgatcacatagcgaactattctttcgccttttactaaagaataccgtgtgagcattacaattagcggcatacgctagtttttggaa 212  Q
    ||||| ||||||| |||| ||||||| ||||||| |||||||||||||||||||||| ||| | | | | ||| || |||||||| ||||||||||||||    
T  51795018 acggaaccgtgtgatgatgacatagcaaactattgtttcgccttttactaaagaatagcgtatcaacgtcacattttgcggcatatgctagtttttggaa 51795117  T
Q  213 gagtcttcttt 223  Q
    ||||| |||||    
T  51795118 gagtcatcttt 51795128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 109 - 175
Target Start/End: Complemental strand, 42217339 - 42217273
Alignment:
Q  109 aagcacggagccgtgtgttgatcacatagcgaactattctttcgccttttactaaagaataccgtgt 175  Q
    ||||| ||||||||||| |||  ||||||||||||||||||||||||||||||||||||||| ||||    
T  42217339 aagcatggagccgtgtgatgacgacatagcgaactattctttcgccttttactaaagaatactgtgt 42217273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 111 - 171
Target Start/End: Original strand, 42417640 - 42417700
Alignment:
Q  111 gcacggagccgtgtgttgatcacatagcgaactattctttcgccttttactaaagaatacc 171  Q
    ||||||||| ||||| |||| |||||||||| |||||||||||||||||||||||||||||    
T  42417640 gcacggagctgtgtgatgatgacatagcgaattattctttcgccttttactaaagaatacc 42417700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 81; Significance: 4e-38; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 112 - 256
Target Start/End: Original strand, 3649475 - 3649619
Alignment:
Q  112 cacggagccgtgtgttgatcacatagcgaactattctttcgccttttactaaagaataccgtgtgagcattacaattagcggcatacgctagtttttgga 211  Q
    |||||||  ||||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||| |||||||||||||    
T  3649475 cacggagttgtgtgatgatgacatagcgaactattctttcgccttttactaaagaataccgtgttagcatcacaattatcggcatatgctagtttttgga 3649574  T
Q  212 agagtcttctttacatagggctctgcaattttagttcaatatttt 256  Q
    || ||| |||| |   ||||||||||||| |||||||||| ||||    
T  3649575 agggtcctcttaattgagggctctgcaatattagttcaatttttt 3649619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 112 - 256
Target Start/End: Original strand, 3647026 - 3647170
Alignment:
Q  112 cacggagccgtgtgttgatcacatagcgaactattctttcgccttttactaaagaataccgtgtgagcattacaattagcggcatacgctagtttttgga 211  Q
    |||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||| ||| | || ||||||||||||| |||||||||| |    
T  3647026 cacggagccgtgtgatgatgacatagcaaactattctttcgccttttactaaagaataccgtgtcagcgtcactattagcggcatacactagtttttgaa 3647125  T
Q  212 agagtcttctttacatagggctctgcaattttagttcaatatttt 256  Q
    || ||| ||||||   ||||||||||||| ||||| |||| ||||    
T  3647126 agggtcctctttattgagggctctgcaatgttagtgcaatgtttt 3647170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 121 - 256
Target Start/End: Original strand, 3657601 - 3657736
Alignment:
Q  121 gtgtgttgatcacatagcgaactattctttcgccttttactaaagaataccgtgtgagcattacaattagcggcatacgctagtttttggaagagtcttc 220  Q
    ||||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||| | |||| ||||||||||| ||||||||||||||  || ||    
T  3657601 gtgtgatgatgacatagcgaactattctttcgccttttactaaagaataccgtgtcagcgtcacaaatagcggcatacactagtttttggaaggatcatc 3657700  T
Q  221 tttacatagggctctgcaattttagttcaatatttt 256  Q
    ||||   ||| ||||||||| |||||||||| ||||    
T  3657701 tttatcgaggactctgcaatattagttcaatttttt 3657736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 117 - 170
Target Start/End: Original strand, 3641211 - 3641264
Alignment:
Q  117 agccgtgtgttgatcacatagcgaactattctttcgccttttactaaagaatac 170  Q
    ||||||||| |||| |||||||||||||||||||||||||||||||||||||||    
T  3641211 agccgtgtgatgatgacatagcgaactattctttcgccttttactaaagaatac 3641264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 184 - 223
Target Start/End: Original strand, 3656176 - 3656215
Alignment:
Q  184 caattagcggcatacgctagtttttggaagagtcttcttt 223  Q
    ||||||| |||||||||||||||||||||||||| |||||    
T  3656176 caattaggggcatacgctagtttttggaagagtcctcttt 3656215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 129 - 176
Target Start/End: Complemental strand, 19523330 - 19523283
Alignment:
Q  129 atcacatagcgaactattctttcgccttttactaaagaataccgtgtg 176  Q
    |||||| ||||||  ||||||||||||||||||||||||| |||||||    
T  19523330 atcacagagcgaataattctttcgccttttactaaagaattccgtgtg 19523283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 108 - 214
Target Start/End: Original strand, 25698804 - 25698910
Alignment:
Q  108 aaagcacggagccgtgtgttgatcacatagcgaactattctttcgccttttactaaagaataccgtgtgagcattacaattagcggcatacgctagtttt 207  Q
    |||||||||||| ||||| ||||||||||| | ||||||||||||||||||| ||||||||||||||||||| | | |||||||||||||||||||||||    
T  25698804 aaagcacggagctgtgtgatgatcacatagtggactattctttcgccttttattaaagaataccgtgtgagcgtcataattagcggcatacgctagtttt 25698903  T
Q  208 tggaaga 214  Q
    |||||||    
T  25698904 tggaaga 25698910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 112 - 256
Target Start/End: Original strand, 17889422 - 17889566
Alignment:
Q  112 cacggagccgtgtgttgatcacatagcgaactattctttcgccttttactaaagaataccgtgtgagcattacaattagcggcatacgctagtttttgga 211  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||  | | || |  |||||||||||||| |||||| |    
T  17889422 cacggagccgtgtgatgagcacatagcgaactattctttcgccttttactaaagaataccgtgtgcacgtcactaaaagcggcatacgctaatttttgaa 17889521  T
Q  212 agagtcttctttacatagggctctgcaattttagttcaatatttt 256  Q
    |||||| || |||   |||| |||||||| |||||| ||||||||    
T  17889522 agagtcctccttaatgagggttctgcaatattagtttaatatttt 17889566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 127 - 208
Target Start/End: Complemental strand, 46362588 - 46362507
Alignment:
Q  127 tgatcacatagcgaactattctttcgccttttactaaagaataccgtgtgagcattacaattagcggcatacgctagttttt 208  Q
    |||| ||||||||||||||| |||||| ||||||||||||||||| ||| ||||| ||| ||||||| ||||| ||||||||    
T  46362588 tgatgacatagcgaactattatttcgctttttactaaagaataccatgtcagcatcacatttagcggtatacgttagttttt 46362507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 131 - 179
Target Start/End: Original strand, 36790854 - 36790902
Alignment:
Q  131 cacatagcgaactattctttcgccttttactaaagaataccgtgtgagc 179  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  36790854 cacaaagcgaactattctttcgccttttactaaagaataccgtgtgagc 36790902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 112 - 176
Target Start/End: Complemental strand, 49588258 - 49588194
Alignment:
Q  112 cacggagccgtgtgttgatcacatagcgaactattctttcgccttttactaaagaataccgtgtg 176  Q
    |||||| ||||||| | | |||| |||||||||||||||||||||||||||||||||||||||||    
T  49588258 cacggaaccgtgtgataagcacaaagcgaactattctttcgccttttactaaagaataccgtgtg 49588194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 126 - 166
Target Start/End: Original strand, 20918685 - 20918725
Alignment:
Q  126 ttgatcacatagcgaactattctttcgccttttactaaaga 166  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  20918685 ttgatcacatagcaaactattctttcgccttttactaaaga 20918725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 6e-34; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 109 - 222
Target Start/End: Original strand, 46446211 - 46446324
Alignment:
Q  109 aagcacggagccgtgtgttgatcacatagcgaactattctttcgccttttactaaagaataccgtgtgagcattacaattagcggcatacgctagttttt 208  Q
    ||||| |||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||   |||||||||||||||||    
T  46446211 aagcatggagccttgtgatgatgacatagcgaactattctttcgccttttactaaagaataccgtgtcagcgttactatttttggcatacgctagttttt 46446310  T
Q  209 ggaagagtcttctt 222  Q
    ||||||||||||||    
T  46446311 ggaagagtcttctt 46446324  T

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Target: chr3; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 112 - 251
Target Start/End: Complemental strand, 21884160 - 21884021
Alignment:
Q  112 cacggagccgtgtgttgatcacatagcgaactattctttcgccttttactaaagaataccgtgtgagcattacaattagcggcatacgctagtttttgga 211  Q
    |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| || | ||    ||||||||||| || |||||| |    
T  21884160 cacggagccgtgtgatgagcacatagcgaactattctttcgccttttactaaagaataccgtgtgcgcgtcacttaaagcggcatacgttaatttttgaa 21884061  T
Q  212 agagtcttctttacatagggctctgcaattttagttcaat 251  Q
    |||||| | || ||  ||||||||||||| | ||||||||    
T  21884060 agagtccttttcaccgagggctctgcaatataagttcaat 21884021  T

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Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 112 - 176
Target Start/End: Original strand, 33891592 - 33891656
Alignment:
Q  112 cacggagccgtgtgttgatcacatagcgaactattctttcgccttttactaaagaataccgtgtg 176  Q
    |||||| ||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||    
T  33891592 cacggaaccgtgtgataagcacatagcgaactattctttcgccttttactaaagaataccgtgtg 33891656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 113 - 167
Target Start/End: Complemental strand, 27868725 - 27868671
Alignment:
Q  113 acggagccgtgtgttgatcacatagcgaactattctttcgccttttactaaagaa 167  Q
    ||||||||||||  |||||||||||| ||||||| ||||| |||||||| |||||    
T  27868725 acggagccgtgtaatgatcacatagcaaactattgtttcgtcttttacttaagaa 27868671  T

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Target: chr2 (Bit Score: 47; Significance: 8e-18; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 121 - 215
Target Start/End: Original strand, 26568347 - 26568441
Alignment:
Q  121 gtgtgttgatcacatagcgaactattctttcgccttttactaaagaataccgtgtgagcattacaattagcggcatacgctagtttttggaagag 215  Q
    ||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||| || | ||    |||||||||||||| |||||| |||||    
T  26568347 gtgtgatgagcacatagcgaactattcttttgccttttactaaagaataccgtgtgcgcgtcacttaaagcggcatacgctaatttttgaaagag 26568441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 107 - 176
Target Start/End: Original strand, 5900520 - 5900589
Alignment:
Q  107 taaagcacggagccgtgtgttgatcacatagcgaactattctttcgccttttactaaagaataccgtgtg 176  Q
    |||| |||||| ||||||| | | |||| |||||||||||||||||||||||||||||||||||||||||    
T  5900520 taaatcacggaaccgtgtgataagcacaaagcgaactattctttcgccttttactaaagaataccgtgtg 5900589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 139 - 176
Target Start/End: Complemental strand, 43633480 - 43633443
Alignment:
Q  139 gaactattctttcgccttttactaaagaataccgtgtg 176  Q
    ||||||||||||||||||||||||||||||||||||||    
T  43633480 gaactattctttcgccttttactaaagaataccgtgtg 43633443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 167
Target Start/End: Complemental strand, 2341391 - 2341338
Alignment:
Q  114 cggagccgtgtgttgatcacatagcgaactattctttcgccttttactaaagaa 167  Q
    ||||||| |||  ||| |||| ||||||||||||||||||||||||| ||||||    
T  2341391 cggagccatgtagtgagcacaaagcgaactattctttcgccttttacaaaagaa 2341338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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