View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16294_low_8 (Length: 239)
Name: NF16294_low_8
Description: NF16294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16294_low_8 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 14 - 239
Target Start/End: Original strand, 15008335 - 15008560
Alignment:
| Q |
14 |
atatagtatacaaaagtaacggtnnnnnnntactatcaaagaagtcaatgactttttgctgatcattaaatcatactggtttttgactggatctcaaaga |
113 |
Q |
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| T |
15008335 |
atatagtatacaaaagtaacggtaaaaaattacaatcaaagaagccaatgactttttgctgatcattaaatcatactggtttttgactggatctcaaaga |
15008434 |
T |
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| Q |
114 |
agccttttattgacatatcaaagtattcacaaaatgggttgttaaggtaaggaacattgccattgttttgttgatgaagtggttaacggatacacccaac |
213 |
Q |
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| T |
15008435 |
agccttttattgacatatcaaagtattcacaaaatgggttgttaaggtaaggaacattgccattgttttgttgatgaagtggttaacggatacacccaac |
15008534 |
T |
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| Q |
214 |
ataataattgaaaaagacctggtacc |
239 |
Q |
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| T |
15008535 |
ataataattgaaaaagacctagtacc |
15008560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 14 - 239
Target Start/End: Original strand, 15022452 - 15022677
Alignment:
| Q |
14 |
atatagtatacaaaagtaacggtnnnnnnntactatcaaagaagtcaatgactttttgctgatcattaaatcatactggtttttgactggatctcaaaga |
113 |
Q |
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||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15022452 |
atatagtatacaaaagtaacggtaaaaaattacaatcaaagaagccaatgactttttgctgatcattaaatcatactggtttttgactggatctcaaaga |
15022551 |
T |
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| Q |
114 |
agccttttattgacatatcaaagtattcacaaaatgggttgttaaggtaaggaacattgccattgttttgttgatgaagtggttaacggatacacccaac |
213 |
Q |
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| T |
15022552 |
agccttttattgacatatcaaagtattcacaaaatgggttgttaaggtaaggaacattgccattgttttgttgatgaagtggttaacggatacacccaac |
15022651 |
T |
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| Q |
214 |
ataataattgaaaaagacctggtacc |
239 |
Q |
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| T |
15022652 |
ataataattgaaaaagacctagtacc |
15022677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 117 - 212
Target Start/End: Complemental strand, 14531025 - 14530928
Alignment:
| Q |
117 |
cttttattgacatatcaaa-gtattcacaaaatgggttg-ttaaggtaaggaacattgccattgttttgttgatgaagtggttaacggatacacccaa |
212 |
Q |
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| T |
14531025 |
cttttattgagagatcaaaaggatttacaaaatgggttgcttaaggtaaggaacattggcattgctttgttggtgcagtggttaatggaaatacccaa |
14530928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 133 - 233
Target Start/End: Original strand, 15029646 - 15029740
Alignment:
| Q |
133 |
aaagtattcacaaaatgggttgttaaggtaaggaacattgccattgttttgttgatgaagtggttaacggatacacccaacataataattgaaaaagacc |
232 |
Q |
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||||||||||||||||||||| ||||| ||||||| || |||||||||| || |||||||| ||| | |||||||||||||||||||| ||||| |
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| T |
15029646 |
aaagtattcacaaaatgggttattaagttaaggaa------cactgttttgttggtgcagtggttagtggaaatacccaacataataattgaaagagacc |
15029739 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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