View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16295_high_1 (Length: 513)
Name: NF16295_high_1
Description: NF16295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16295_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 486; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 18 - 503
Target Start/End: Original strand, 41227896 - 41228381
Alignment:
| Q |
18 |
aaatctgtcaaagaaagaatccatcatcttccaattgagtccacaaatagcaataatatatgcctagctaggggtacatacatcaaatatgaactgcaac |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41227896 |
aaatctgtcaaagaaagaatccatcatcttccaattgagtccacaaatagcaataatatatgcctagctaggggtacatacatcaaatatgaactgcaac |
41227995 |
T |
|
| Q |
118 |
atacctgatttgaatccaaactgcaaggagaaaatgcgcctctcttgaactctttggaagtaacttttcgttttggagaagcatcgaagcaaagtctcat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41227996 |
atacctgatttgaatccaaactgcaaggagaaaatgcgcctctcttgaactctttggaagtaacttttcgttttggagaagcatcgaagcaaagtctcat |
41228095 |
T |
|
| Q |
218 |
ttggttggttgcaactaattgatgtttcccgcgatagtcctcttgatacttactctctttgtctctgtaacaacaacaattaaacaatttatgttgttaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41228096 |
ttggttggttgcaactaattgatgtttcccgcgatagtcctcttgatacttactctctttgtctctgtaacaacaacaattaaacaatttatgttgttaa |
41228195 |
T |
|
| Q |
318 |
caacaaaaataatcaactaagttatataaatagaacatagaaagataaagtgtgattacaatctgaattgaagttctctcttgtgtacacagaaagggtt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41228196 |
caacaaaaataatcaactaagttatataaatagaacatagaaagataaagtgtgattacaatctgaattgaagttctctcttgtgtacacagaaagggtt |
41228295 |
T |
|
| Q |
418 |
ctgatgcttgttttctgcactccctttccaacagattctttcaagatcttggttaatattttcaatagtccaaccacttgcctttg |
503 |
Q |
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| T |
41228296 |
ctgatgcttgttttctgcactccctttccaacagattctttcaagatcttggttaatattttcaatagtccaaccacttgcctttg |
41228381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 96 - 473
Target Start/End: Complemental strand, 37377185 - 37376808
Alignment:
| Q |
96 |
tacatcaaatatgaactgcaacatacctgatttgaatccaaactgcaaggagaaaatgcgcctctcttgaactctttggaagtaacttttcgttttggag |
195 |
Q |
| |
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||||| ||||||| ||| ||| ||||||||||||| ||||| |||||||||||||||| | ||||||| || |||||||||||| |||||||||||| || |
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| T |
37377185 |
tacatgaaatatggactacaatatacctgatttgagtccaatctgcaaggagaaaatgtggctctcttcaaatctttggaagtatcttttcgttttgtag |
37377086 |
T |
|
| Q |
196 |
aagcatcgaagcaaagtctcatttggttggttgcaactaattgatgtttcccgcgatagtcctcttgatacttactctctttgtctctgtaacaacaaca |
295 |
Q |
| |
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|| |||| ||||||| ||||||||||||||||||||| || ||||||||||||||||||||||| |||||| |||||||| |||||||||||||| | |
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| T |
37377085 |
aaccatctaagcaaactctcatttggttggttgcaaccaaatgatgtttcccgcgatagtcctcatgatacatactctctccatctctgtaacaacataa |
37376986 |
T |
|
| Q |
296 |
attaaacaatttatgttgttaacaacaaaaataatcaactaagttatataaatagaacatagaaagataaagtgtgattacaatctgaattgaagttctc |
395 |
Q |
| |
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|||||| |||||||||||||||||||||||||| |||| ||||||||||||| ||| ||||||||||||||| || |||||||||| ||| ||||||||| |
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| T |
37376985 |
attaaataatttatgttgttaacaacaaaaatagtcaaataagttatataaacagagcatagaaagataaagcgttattacaatctcaatggaagttctc |
37376886 |
T |
|
| Q |
396 |
tcttgtgtacacagaaagggttctgatgcttgttttctgcactccctttccaacagattctttcaagatcttggttaa |
473 |
Q |
| |
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| |||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
37376885 |
ttttgtgtacgcagaaagggttctgatgcaagttttctgcactccctttccaacagattctttcaagatctcggttaa |
37376808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 95 - 471
Target Start/End: Complemental strand, 37384552 - 37384176
Alignment:
| Q |
95 |
atacatcaaatatgaactgcaacatacctgatttgaatccaaactgcaaggagaaaatgcgcctctcttgaactctttggaagtaacttttcgttttgga |
194 |
Q |
| |
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|||||| ||||||| ||| || |||||||||||| |||||| |||||||||||||||| |||| | ||||||||||||||||||||||||||||||| | |
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| T |
37384552 |
atacatgaaatatggactataatatacctgatttgtatccaatctgcaaggagaaaatgtgcctttgttgaactctttggaagtaacttttcgttttgaa |
37384453 |
T |
|
| Q |
195 |
gaagcatcgaagcaaagtctcatttggttggttgcaactaattgatgtttcccgcgatagtcctcttgatacttactctctttgtctctgtaacaacaac |
294 |
Q |
| |
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||| |||| ||||||| ||||||||||||||||||||| || |||||||||||||||||||||||||||| | || ||||| |||||| ||||| | | |
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| T |
37384452 |
gaaccatccaagcaaaatctcatttggttggttgcaaccaaatgatgtttcccgcgatagtcctcttgatgcgtattctctccatctctgcaacaatatc |
37384353 |
T |
|
| Q |
295 |
aattaaacaatttatgttgttaacaacaaaaataatcaactaagttatataaatagaacatagaaagataaagtgtgattacaatctgaattgaagttct |
394 |
Q |
| |
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||| ||||||||||||||||| |||| ||||||||||||| || |||||||||||||||| |||||||||||| ||||||||||||||||||||| ||| |
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| T |
37384352 |
aataaaacaatttatgttgttgacaaaaaaaataatcaaccaaattatataaatagaacagagaaagataaagcctgattacaatctgaattgaaggtct |
37384253 |
T |
|
| Q |
395 |
ctcttgtgtacacagaaagggttctgatgcttgttttctgcactccctttccaacagattctttcaagatcttggtt |
471 |
Q |
| |
|
||||||||||| |||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
37384252 |
ctcttgtgtacgcagaaagggttctgattcttgatttctaaactccctttccaacagattctttcaagatcttggtt |
37384176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 114 - 241
Target Start/End: Complemental strand, 39247017 - 39246890
Alignment:
| Q |
114 |
caacatacctgatttgaatccaaactgcaaggagaaaatgcgcctctcttgaactctttggaagtaacttttcgttttggagaagcatcgaagcaaagtc |
213 |
Q |
| |
|
||||||||||||||||||||||| ||||| || ||||||| |||||| |||||||||| ||||||| |||||| ||| ||||||||| ||||||| | |
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| T |
39247017 |
caacatacctgatttgaatccaacctgcagggcgaaaatgtacctctcctgaactctttagaagtaagctttcgtcttgcagaagcatccaagcaaaatt |
39246918 |
T |
|
| Q |
214 |
tcatttggttggttgcaactaattgatg |
241 |
Q |
| |
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| |||| |||| ||||||||| ||||| |
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| T |
39246917 |
ttattttgttgactgcaactaaatgatg |
39246890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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