View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16295_high_6 (Length: 292)
Name: NF16295_high_6
Description: NF16295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16295_high_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 43129394 - 43129122
Alignment:
| Q |
1 |
aaaaatgctgtccatgaaggctcaacgaaggctcagnnnnnnnnnnnnnnnnngggctcaaaagggaagaatggtggctcagtgaaggtgaagaaggagg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43129394 |
aaaaatgctgtccatgaaggctcaacgaaggctcagaaaagaaaaaagaaaaagggctcaaaagggaagaatggtggctcagtgaaggtgaagaaggagg |
43129295 |
T |
|
| Q |
101 |
aggaatgctacgatccttcactgccagctgggataaatttacccatggagtggacttactaagccaacaattctaagggctccattttgaaggcaatgaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
43129294 |
aggaatgctacgatccttcactgccagctgggataaatttacccatggagtggacttactaagccaacaattctaa-ggctccattttgaaggcaatgaa |
43129196 |
T |
|
| Q |
201 |
agtgagaataatctataagctcaaataatgttttaagaattatcaaataaatattgaaagacattggaactata |
274 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43129195 |
agtgagaataatctataagctcaaataatgttttaagaattatcaaataaatattgaaagacattggaactata |
43129122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 57 - 169
Target Start/End: Complemental strand, 43139595 - 43139484
Alignment:
| Q |
57 |
ctcaaaagggaagaatggtggctcagtgaaggtgaagaaggaggaggaatgctacgatccttcactgccagctgggataaatttacccatggagtggact |
156 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||| ||| |||||||||| | |||| ||| ||||| |||| ||| |||||||| |||||||||| |
|
|
| T |
43139595 |
ctcaaaagggaagaatggtgactcagagaaggtgaa-aagaaggaggaatgtcatgatcattctctgcctcctggaatagttttacccacggagtggact |
43139497 |
T |
|
| Q |
157 |
tactaagccaaca |
169 |
Q |
| |
|
|||||| |||||| |
|
|
| T |
43139496 |
tactaatccaaca |
43139484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University