View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16295_low_1 (Length: 792)
Name: NF16295_low_1
Description: NF16295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16295_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 715; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 715; E-Value: 0
Query Start/End: Original strand, 11 - 774
Target Start/End: Complemental strand, 27261758 - 27260995
Alignment:
| Q |
11 |
catcatcacttagaagttacaacttgtccaacattgaatagaatcataatagcttcatccatttttaatgtccctttccatgccacatcagttttaagaa |
110 |
Q |
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| T |
27261758 |
catcatcacttagaagttacaacttgtccaacattgaatagaatcataatagcttcatccatttttaatgtccctttccatgccacatcagttttaagaa |
27261659 |
T |
|
| Q |
111 |
tttcaacaattttttattccaactatgtaacatgtatctcaccttatctcactttcaacttgttttccttctcctactttcttaagtctactttttcact |
210 |
Q |
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| T |
27261658 |
tttcaacaattttttattccaactatgtaacatgtatctcaccttatctcactttcaacttgttttccttctcctactttcttaagtctactttttcatt |
27261559 |
T |
|
| Q |
211 |
ttaagtcactaaagttgttgaatgtgacaaccacatgaaattcaaccatctctagtggtaaagtcaaataagaacctgttcctaacttctagagctcaac |
310 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
27261558 |
ttaagtcactaaagttgttgaatgtgataaccacatgaaattcaaccatctctagtggtaaagccaaataagaacctgttcctaacttctagagctcaac |
27261459 |
T |
|
| Q |
311 |
aagacactactgaaaatgctctaagtagataaacatggacaataataattgaagttcattaatattatacatggtttaaccaacatgctactttgaaaac |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27261458 |
aagacactactgaaaatgctctaagtagataaacatggacaataataattgaagttcattaatattatacatggtttaaccaacatgctactttgaaaac |
27261359 |
T |
|
| Q |
411 |
tagaataccactatgcnnnnnnngaattcaaacttgcttatagatatgaatatttaacttcaagcatatttgtttaaagaactaagttcagctatactaa |
510 |
Q |
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| T |
27261358 |
tagaataccactatgcaaaaaaagaattcaaacttgcttatagatatgaatatttaacttcaagcatatttgtttaaagaactaagttcagctatactaa |
27261259 |
T |
|
| Q |
511 |
ttggcaagttttttaagttaagtatcataccgtggtcttaacgagctcattggcataggaaccagctctgatagtgagacttgatggagcggcggggttg |
610 |
Q |
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|||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27261258 |
ttggtaagttttttaagttaagtatcataccgcggtcttaacgagctcattggcataggaaccagctctgatagtgagacttgatggagcggcggggttg |
27261159 |
T |
|
| Q |
611 |
catcgtacagcggccaccgaagattgacggagggtttggcccttcacccattcagatttgtcaagaacaattgatgacttgaagagagatgctgatgcag |
710 |
Q |
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| T |
27261158 |
catcgtacagcggccaccgaagattgacggagggtttggcccttcacccattcagacttgtcaagaacaattgatgacttgaagagagatgctgatgcag |
27261059 |
T |
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| Q |
711 |
atgccattgtttactgtctaacaagaaactgaaatcttatccctcaaacaatgaacctctttac |
774 |
Q |
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| T |
27261058 |
atgccattgtttactgtctaacaagaaactgcaatcttatccctcaaacaatgaacctctttac |
27260995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 538 - 717
Target Start/End: Complemental strand, 21193576 - 21193391
Alignment:
| Q |
538 |
taccgtggtcttaacgagctcattggcataggaaccagctctgatagtgagacttgatggagcggcggggttgcatcgtacagcggccaccgaaga---t |
634 |
Q |
| |
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||||| |||||| |||||||| | |||||||||||||||||| || || |||| ||||||||| | |||||||||| ||| | | || ||||| | |
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| T |
21193576 |
taccgcggtcttgacgagctcgtcggcataggaaccagctctaatggtaagacctgatggagcagtagggttgcatctaacaacagacatagaagaaggt |
21193477 |
T |
|
| Q |
635 |
tgacggagg---gtttggcccttcacccattcagatttgtcaagaacaattgatgacttgaagagagatgctgatgcagatgccat |
717 |
Q |
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| T |
21193476 |
tgacgtaggagtgtttgtcccttcacccattcagacttgtcaagaacaagggatgacttgaaacaagatgctgaagcagaagccat |
21193391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 538 - 717
Target Start/End: Complemental strand, 27249349 - 27249164
Alignment:
| Q |
538 |
taccgtggtcttaacgagctcattggcataggaaccagctctgatagtgagacttgatggagcggcggggttgcatcgtacagcggccaccgaaga---t |
634 |
Q |
| |
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||||| |||||| |||||||| | |||||||||||||||||| || || |||| ||||||||| | |||||||||| ||| | | || ||||| | |
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| T |
27249349 |
taccgcggtcttgacgagctcgtcggcataggaaccagctctaatggtaagacctgatggagcagtagggttgcatctaacaacagacatagaagaaggt |
27249250 |
T |
|
| Q |
635 |
tgacggagg---gtttggcccttcacccattcagatttgtcaagaacaattgatgacttgaagagagatgctgatgcagatgccat |
717 |
Q |
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||||| ||| ||||| ||||||||||||||||| ||||||||||||| ||||||||||| ||||||||| ||||| ||||| |
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| T |
27249249 |
tgacgtaggagtgtttgtcccttcacccattcagacttgtcaagaacaagggatgacttgaaacaagatgctgaagcagaagccat |
27249164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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