View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16295_low_10 (Length: 251)
Name: NF16295_low_10
Description: NF16295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16295_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 19 - 236
Target Start/End: Complemental strand, 12879111 - 12878894
Alignment:
| Q |
19 |
actttgttggtatccactgtttcaattcttggtttgttagagatattaattaaagccaaaaattagtagacattttaaagagtaaacttacacataaata |
118 |
Q |
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| T |
12879111 |
actttgttggtatccactgtttcaattcttggtttgttagagatattaattaaagccaaaaattagtagacattttaaagagtaaacttacacataaacg |
12879012 |
T |
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| Q |
119 |
gccttgggcataagattgtgtcaatttaagttcaaaacttggattcacattattggatttctcattaaccactccagttattgaacacctctttgctttc |
218 |
Q |
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| T |
12879011 |
gccatggacataacttcgtgtcaatttaagttcaaaacttggatttccattattggatttctcattaaccactccagttattgaacacctctttgctttc |
12878912 |
T |
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| Q |
219 |
ttagtcatgcttcctttg |
236 |
Q |
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|||||||||||||||||| |
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| T |
12878911 |
ttagtcatgcttcctttg |
12878894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 25 - 236
Target Start/End: Original strand, 12192486 - 12192695
Alignment:
| Q |
25 |
ttggtatccactgtttcaattcttggtttgttagagatattaattaaagccaaaaattagtagacattttaaagagtaaacttacacataaatagccttg |
124 |
Q |
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| T |
12192486 |
ttggtatcctctgtttcaattcaaggtttattagagatattaattaaagccaaaa--tagaagacattttcaaaagtaaacttacaaataagtttccttg |
12192583 |
T |
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| Q |
125 |
ggcataagattgtgtcaatttaagttcaaaacttggattcacattattggatttctcattaaccactccagttattgaacacctctttgctttcttagtc |
224 |
Q |
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| T |
12192584 |
ggcataaaattgtgtcaatttaagttcaaaacttggattcttattgttggatttcttattatttgcttcagctattgaacatctcttagccttcttcgtc |
12192683 |
T |
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| Q |
225 |
atgcttcctttg |
236 |
Q |
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| T |
12192684 |
atgcctcctttg |
12192695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 173
Target Start/End: Original strand, 12977621 - 12977678
Alignment:
| Q |
116 |
atagccttgggcataagattgtgtcaatttaagttcaaaacttggattcacattattg |
173 |
Q |
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| T |
12977621 |
atagccatgggcgtaagattgtgacaaatcaagttcaaaacttggattctcattattg |
12977678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 12886480 - 12886529
Alignment:
| Q |
25 |
ttggtatccactgtttcaattcttggtttgttagagatattaattaaagc |
74 |
Q |
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| T |
12886480 |
ttggtacccactgtttcaaatcatagtttattagagatattaattaaagc |
12886529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 79
Target Start/End: Complemental strand, 12941604 - 12941551
Alignment:
| Q |
26 |
tggtatccactgtttcaattcttggtttgttagagatattaattaaagccaaaa |
79 |
Q |
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| T |
12941604 |
tggtaaccactgtttcaaataatggtttattagagatattaattaaagctaaaa |
12941551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 79
Target Start/End: Complemental strand, 12949642 - 12949589
Alignment:
| Q |
26 |
tggtatccactgtttcaattcttggtttgttagagatattaattaaagccaaaa |
79 |
Q |
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||||| |||||||||||| | |||||| |||||||||||||||||||| |||| |
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| T |
12949642 |
tggtaaccactgtttcaaataatggtttattagagatattaattaaagctaaaa |
12949589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 79
Target Start/End: Complemental strand, 12955281 - 12955228
Alignment:
| Q |
26 |
tggtatccactgtttcaattcttggtttgttagagatattaattaaagccaaaa |
79 |
Q |
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| T |
12955281 |
tggtaaccactgtttcaaataatggtttattagagatattaattaaagctaaaa |
12955228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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