View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16295_low_3 (Length: 421)
Name: NF16295_low_3
Description: NF16295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16295_low_3 |
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| [»] scaffold0072 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 1 - 407
Target Start/End: Original strand, 65525 - 65932
Alignment:
| Q |
1 |
gtaaaggaattgcaattgaagacctcgaggaaggcagaaacagagcttcaagtacttcattatttaatagtattatggttgagtctcttgaactatctga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
65525 |
gtaaaggaattgcaattgaagacctcgaggaaggcagaaacagagcttcaagtacttcattatttaatagtattatggttgagtctcttgaactatctga |
65624 |
T |
|
| Q |
101 |
aagaggttcacgctcagaaaagcataatgatattgcaattcaagctttgcagaaggcaatcataaaacttgatcaattggatcttgaagaaccaaatgaa |
200 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
65625 |
aagaggttcacgctcagaaaagcatgatgatattgcaattcaagctttgcagaaggcaatcataaaacttgatcaattggatcttgaagaaccaaatgaa |
65724 |
T |
|
| Q |
201 |
gagtttgataaatcgacatttgaagttatgcctaaagtctccaatgaccagaccataaacttgtgtgatcctccacgtgcggtccctaaaggtcgtccat |
300 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
65725 |
gagtttgataaatcgaaatttgaagttatgcctaaagtctccaatgaccagactataaacttgtgtgatcctccacgtgcggtccctaaaggtcgtccac |
65824 |
T |
|
| Q |
301 |
gcactttacaaatgaaaggcagtttggaattgcacaagaaaaattccatcagttgtagttattgc-attggaaaaggccacaacaaacgtagatgtccaa |
399 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||| |
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| T |
65825 |
gcactttacaaatgaaaggcagtttgcaattgcacaagaaaaattcaatcagttgtagttattgcaattgaaaaaggccacaacaaacgtagatgtccaa |
65924 |
T |
|
| Q |
400 |
gtttaaaa |
407 |
Q |
| |
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|||||||| |
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|
| T |
65925 |
gtttaaaa |
65932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 407
Target Start/End: Original strand, 51167523 - 51167929
Alignment:
| Q |
1 |
gtaaaggaattgcaattgaagacctcgaggaaggcagaaacagagcttcaagtacttcattatttaatagtattatggttgagtctcttgaactatctga |
100 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51167523 |
gtaaaggagttgcaattgaagacctcgaggaaggcagaaacagagcttcaagtacttcattatttaatagtattatggttgagtctcttgaactatctga |
51167622 |
T |
|
| Q |
101 |
aagaggttcacgctcagaaaagcataatgatattgcaattcaagctttgcagaaggcaatcataaaacttgatcaattggatcttgaagaaccaaatgaa |
200 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
51167623 |
aagaggttcacgctcagaaaagcatcatggtattgcaattcaagctttgcaaaaggcaatcacaaaacttgatcaattggatcttgaagaaccaaatgaa |
51167722 |
T |
|
| Q |
201 |
gagtttgataaatcgacatttgaagttatgcctaaagtctccaatgaccagaccataaacttgtgtgatcctccacgtgcggtccctaaaggtcgtccat |
300 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
51167723 |
aagtttgataaatcggcatttgaagttatgcctaaagtctccgatgaccagaccataaacttgtgtgatcctccacgtgcggtccctaaaggtcgtccat |
51167822 |
T |
|
| Q |
301 |
gcactttacaaatgaaaggcagtttggaattgcacaagaaaaattccatcagttgtagttattgcattggaaaaggccacaacaaacgtagatgtccaag |
400 |
Q |
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|
||||||||| |||| || |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
51167823 |
gcactttacgaatgcaaagcagtttggaattgcacaagaaaaattcaatcagttgtagttattgcaatggaaaaggccacaacaaacgtagatgtccaag |
51167922 |
T |
|
| Q |
401 |
tttaaaa |
407 |
Q |
| |
|
||||||| |
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|
| T |
51167923 |
tttaaaa |
51167929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0072 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: scaffold0072
Description:
Target: scaffold0072; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 407
Target Start/End: Original strand, 383 - 788
Alignment:
| Q |
1 |
gtaaaggaattgcaattgaagacctcgaggaaggcagaaacagagcttcaagtacttcattatttaatagtattatggttgagtctcttgaactatctga |
100 |
Q |
| |
|
|||||||| ||||||||||||||| || |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
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|
| T |
383 |
gtaaaggacttgcaattgaagaccatgaagaaggcagaaaccaagcttcaagtacttcattgtttaatagtattatggttgagtctcttgagctatctga |
482 |
T |
|
| Q |
101 |
aagaggttcacgctcagaaaagcataatgatattgcaattcaagctttgcagaaggcaatcataaaacttgatcaattggatcttgaagaaccaaatgaa |
200 |
Q |
| |
|
|||||||||||| || ||| ||| |||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||| ||||||| ||||||||| |
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|
| T |
483 |
aagaggttcacgatcgataaaacatcatgatattgcaattcaagctttgcggaagg-aatcacaaaacttgatcaattggatattgaagagccaaatgaa |
581 |
T |
|
| Q |
201 |
gagtttgataaatcgacatttgaagttatgcctaaagtctccaatgaccagaccataaacttgtgtgatcctccacgtgcggtccctaaaggtcgtccat |
300 |
Q |
| |
|
||||||| ||| || | |||||||||||||||||||||||| | ||||| |||||||| || |||||||| ||||||| |||||||||||||||||| |
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|
| T |
582 |
gagtttgttaattcaatgtttgaagttatgcctaaagtctccgacgaccaaaccataaatttatgtgatccaccacgtgttgtccctaaaggtcgtccac |
681 |
T |
|
| Q |
301 |
gcactttacaaatgaaaggcagtttggaattgcacaagaaaaattccatcagttgtagttattgcattggaaaaggccacaacaaacgtagatgtccaag |
400 |
Q |
| |
|
| ||||||| ||||||||| ||||||||||||| ||| ||| ||| || | ||||||||||||| ||||||||||| ||||||||||| |||||||| |
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|
| T |
682 |
gtactttacgaatgaaaggaagtttggaattgctcaaaaaaggttcaatgaagtgtagttattgcaagggaaaaggccataacaaacgtagttgtccaag |
781 |
T |
|
| Q |
401 |
tttaaaa |
407 |
Q |
| |
|
||||||| |
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|
| T |
782 |
tttaaaa |
788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 12 - 337
Target Start/End: Original strand, 19330432 - 19330757
Alignment:
| Q |
12 |
gcaattgaagacctcgaggaaggcagaaacagagcttcaagtacttcattatttaatagtattatggttgagtctcttgaactatctgaaagaggttcac |
111 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||| | |
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|
| T |
19330432 |
gcaattgaagaccttgaggaaggtagaaacagagcttcaagtacttcattgtttaatagtattatggttgagtttcttgaattatctgaaagaggttcgc |
19330531 |
T |
|
| Q |
112 |
gctcagaaaagcataatgatattgcaattcaagctttgcagaaggcaatcataaaacttgatcaattggatcttgaagaaccaaatgaagagtttgataa |
211 |
Q |
| |
|
| ||| ||||| || ||||||||||||||||| |||| | ||| | ||||| | |||| |||| |||||| |||||||||||||||||| ||||||||| |
|
|
| T |
19330532 |
gatcaaaaaagtatcatgatattgcaattcaaactttacggaaagaaatcacagaactagatcgtttggatattgaagaaccaaatgaagggtttgataa |
19330631 |
T |
|
| Q |
212 |
atcgacatttgaagttatgcctaaagtctccaatgaccagaccataaacttgtgtgatcctccacgtgcggtccctaaaggtcgtccatgcactttacaa |
311 |
Q |
| |
|
||||||||| | |||||||||||||| ||||| ||| ||| |||| | ||| | |||||| | | |||||| |||||||||||||||||| ||| | |
|
|
| T |
19330632 |
ttcgacatttaaggttatgcctaaagtatccaacgactagatcatacatttgcgcaatcctctccattcggtcctgaaaggtcgtccatgcactctacga |
19330731 |
T |
|
| Q |
312 |
atgaaaggcagtttggaattgcacaa |
337 |
Q |
| |
|
||||||||||||||||||||| |||| |
|
|
| T |
19330732 |
atgaaaggcagtttggaattgtacaa |
19330757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 111; Significance: 7e-56; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 48776026 - 48776204
Alignment:
| Q |
1 |
gtaaaggaattgcaattgaagacctcgaggaaggcagaaacagagcttcaagtacttcattatttaatagtattatggttgagtctcttgaactatctga |
100 |
Q |
| |
|
|||||||| |||||||||||||||| || ||||| |||||| |||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
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|
| T |
48776026 |
gtaaaggacttgcaattgaagaccttgaagaaggtagaaaccgagcctcaagtacttcattgtttaatagtattatggttgagtctcttgagctatctga |
48776125 |
T |
|
| Q |
101 |
aagaggttcacgctcagaaaagcataatgatattgcaattcaagctttgcagaaggcaatcataaaacttgatcaattg |
179 |
Q |
| |
|
|||||||||||| || |||| ||| |||||||||||||||||||||||| |||||| ||| |||||||||||||||| |
|
|
| T |
48776126 |
aagaggttcacgatcgaaaaaacatcatgatattgcaattcaagctttgcggaaggcgatcgcaaaacttgatcaattg |
48776204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 96
Target Start/End: Original strand, 48776205 - 48776238
Alignment:
| Q |
63 |
tttaatagtattatggttgagtctcttgaactat |
96 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |
|
|
| T |
48776205 |
tttaatagtattatggttgagtctcttgagctat |
48776238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 44 - 219
Target Start/End: Complemental strand, 44884477 - 44884302
Alignment:
| Q |
44 |
agcttcaagtacttcattatttaatagtattatggttgagtctcttgaactatctgaaagaggttcacgctcagaaaagcataatgatattgcaattcaa |
143 |
Q |
| |
|
|||||| || |||||||| ||||||||| |||||||| |||||||| | |||||||||| |||||| ||| |||| ||| ||||||||||||||||| |
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|
| T |
44884477 |
agcttctagcacttcattgtttaatagtgttatggttcgtcctcttgaattttctgaaagagcttcacgatcaaaaaaacatcatgatattgcaattcaa |
44884378 |
T |
|
| Q |
144 |
gctttgcagaaggcaatcataaaacttgatcaattggatcttgaagaaccaaatgaagagtttgataaatcgacat |
219 |
Q |
| |
|
|||||| || ||||| ||||||||||| | | || ||||||||| ||||||| ||||||| ||| ||||||| |
|
|
| T |
44884377 |
tgtttgcaaaatgcaattgcaaaacttgatctaatagagcttgaagaatcaaatgaggagtttgttaattcgacat |
44884302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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